Helicobacter suis: NHP194022_10420
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Entry
NHP194022_10420 CDS
T07888
Symbol
uvrD
Name
(GenBank) DNA helicase II UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hsh
Helicobacter suis
Pathway
hsh03420
Nucleotide excision repair
hsh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NHP194022_10420 (uvrD)
03430 Mismatch repair
NHP194022_10420 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsh03400
]
NHP194022_10420 (uvrD)
Enzymes [BR:
hsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NHP194022_10420 (uvrD)
DNA repair and recombination proteins [BR:
hsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NHP194022_10420 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
NHP194022_10420 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_12
AAA_30
Stereocilin
sCache_4
CarD_TRCF_RID
Motif
Other DBs
NCBI-ProteinID:
BCD51371
LinkDB
All DBs
Position
complement(1020003..1022057)
Genome browser
AA seq
684 aa
AA seq
DB search
MNKIEILMQNLNPAQKRAVEHVQGPLLVLAGAGSGKTKTLTTRLAYLIGYVGIPPENTLT
LTFTNKAASEMHQRAMKLIGRRTYKPTLCTFHSFGLNFLKHHMERLGRGLDFELKRPNEL
LKALKPALLAYKKDTRIENDQMFLNYLVKRFSQIKNHLIAPEECKDIWRAFMYYTETLEK
ENWVDFDDLIALPYMILNYDLELAKRISERYQYISIDEYQDTNPLQLKLIKTFCCAHENL
CAVGDDDQSIYGFRGADIENILNFPEYFPQTKIIKLEQNYRSTKEILTCANELIVHNKKR
YQKTLISQKDQSSVQKLEAPHFTNTTEENNFITKKILEAANRGVVYEDMAILYRFNCLSK
EVEKGLLQAKIPYTIIGDISFYERAIIKDRLAYLHALMNSHADDCILRLLPKLKHIGKGS
LDKIKNLCARESSSIAKTYQAGLLKPLLSPSSYVSLQDFFTLLFDLAKDARSIKNTEQAH
ILFTSYFRICKEELEKQELANSDEEVKEELNYLSRLEETFMSCMEDSLELKGVASIQDFL
EQIILETPIVDSKGVKCMSVHKAKGLEFSVVFVIGFEEEFFPYKNAEDQEEERRLGYVAI
TRAKEELYLCSAQERNYFGTLQAGLEPSHFLKEAKLPCQILNIGDCVMHSVFGKGVIEAL
NNDRIQVRFESNTYWLMASMIKKA
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaatagaaattcttatgcaaaatcttaacccggcacaaaaaagagcggtagag
catgtacaaggtcccttgcttgttttagccggggcaggcagtggcaaaactaaaacgcta
accacccgtttagcctatttaattggctatgtaggaatcccccctgagaatactttaacc
ctcacttttacgaataaagcagcaagtgaaatgcaccagcgcgcgatgaaattaataggt
aggcgtacttataaacccacactttgtactttccatagctttggacttaactttttaaaa
catcacatggagcgtttagggcgggggttagattttgagcttaaacgccctaatgaactt
ttaaaggccttaaaacctgctttacttgcctataaaaaagatacgcgtatagaaaacgat
caaatgtttttaaattacttagtaaagcgcttttcacagattaaaaaccacctcatcgct
ccggaggaatgtaaagatatatggcgcgcttttatgtattacacagaaactttagaaaaa
gaaaactgggtggattttgatgatttaattgccttgccttatatgattttaaactacgat
ttagaattggctaagcgcataagtgagcgttaccaatacatttctatagatgaataccaa
gacacaaaccctctccaacttaaactcattaaaaccttttgttgtgcccatgagaatctt
tgtgcggtgggcgatgatgatcaaagcatttatgggtttagaggggcagatatagaaaat
attttaaatttccctgaatattttcctcaaactaaaattatcaaattagaacaaaactac
cgctccacaaaagaaattttaacctgtgctaatgaactgattgtccacaataagaagcgc
taccaaaaaactttaattagccaaaaagatcaaagttctgtgcaaaaactagaagccccg
cattttacaaacaccacagaggaaaataactttatcactaaaaagattttagaagcggct
aatcggggggttgtctatgaggatatggctattttgtatcgctttaattgtctctctaaa
gaagtagaaaaaggtttattacaggctaaaatcccctacacgatcataggcgatattagt
ttttatgaacgcgctatcatcaaagatcgcctagcctatttacatgctcttatgaattct
catgcagatgattgtattttgcgcttattacctaaactcaaacacatcggtaaaggcagt
ttagataaaattaaaaatctatgcgctagagaatcaagtagcattgctaaaacctatcag
gccggcttattaaaacccctattatctccaagttcctatgtgtctttacaggattttttt
acccttctttttgatctagcaaaagacgcccgctctatcaaaaatacagaacaagcacat
attctttttacaagttattttagaatatgtaaagaagagctagaaaagcaagagctagct
aattctgatgaagaggttaaagaggagttaaattatctttcacgcttagaagagactttt
atgagctgtatggaggatagtttagaattaaagggcgtggctagtatacaagacttttta
gaacaaatcattttagaaacccctattgtagattctaagggcgttaaatgcatgagtgtg
cataaagctaagggtttagagtttagcgtggtttttgttataggctttgaggaggagttt
ttcccttacaaaaatgcagaggatcaagaggaggagcgccgtttgggctatgtggctatc
acgcgcgctaaagaggagctttatttatgtagcgcacaagaaagaaattattttggaaca
ctccaagcaggtttagaaccctcccattttttaaaagaagccaaattgccatgccaaatt
ttaaatatcggggattgtgtgatgcattcagtctttggtaagggtgtgattgaggcctta
aataatgatcgtatccaagtgcgctttgagtctaatacttattggcttatggcttctatg
attaagaaggcttaa
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