Helicobacter suis: NHP194022_11670
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Entry
NHP194022_11670 CDS
T07888
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hsh
Helicobacter suis
Pathway
hsh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hsh00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NHP194022_11670 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsh03021
]
NHP194022_11670 (rpoD)
Transcription machinery [BR:
hsh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NHP194022_11670 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Birna_VP3
MCR_beta_N
Sigma70_r4_2
DUF1687
Motif
Other DBs
NCBI-ProteinID:
BCD51496
LinkDB
All DBs
Position
complement(1139037..1140932)
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AA seq
631 aa
AA seq
DB search
MENKNPNKATKNSISTKQNFPQEKLEKLFQEPHPTVSYERIIDVIQKIPTTSQLKKIKEL
VAKYHKTLVHSSEYAHTSLSSLEHKNSRKKSKVLEYDIEENLDFIKEKELPEWSRSDSPV
RMYLREMGEIPLLSKEEEVYLSKQIKLGENIILDAICSVPYLIDFIYNYKEALINRERRV
KELFRNFDNEGSMAKKDEDVEIEDSEEEDTPEIKRNSSDKDKKRVEEVLESFKALNKAKK
EWLKLLNTPVEEQEDPLLHALTLAYKCRVLKEKLYDLGPTSKLINELVKAMETSLKSDDG
FEKELKRLEYKLSLFNESLIENHKNILKNITTMSREEIIAMMPEATMIGVYMEIKKLFQT
KEASKDGFNLEPSKLKEILSQIKRGKLISDRAKNKMARSNLRLVVSIAKRYTSRGLPFLD
LIQEGNIGLMKAVDKFEHEKNYKFSTYATWWIKQAISRAIADQARTIRIPIHMIDTINRI
NKVMRKYMQENGKEPDLDLVAKEVGLPLDKVRNVIKITKEPISLESPVGNDDDGKFGDFV
EDKNVVGSMEHIMREDLKAQIDGVLDQLNEREKSVIRMRFGLLEDESDRTLEEIGKELNV
TRERVRQIESSAIKKLRSPQYGRLLRSYLRI
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacaaaaaccctaataaagcaaccaaaaatagcatctctactaagcagaatttt
ccccaagaaaaattagaaaaacttttccaagaaccccatcctaccgtctcttatgagcgc
attattgatgtgatccaaaaaatccccaccacatctcagctcaaaaaaattaaggaacta
gtggctaagtatcataaaacccttgtccactcctctgagtacgcccacacttccttatcc
tcccttgagcataaaaattcgcgcaagaaatctaaagtcttagaatacgatatagaggaa
aacttagattttatcaaagaaaaggaactaccggagtggtcaagaagtgatagccctgtg
cgcatgtatttgcgcgaaatgggtgaaatcccacttctaagcaaagaggaggaggtgtat
ttaagcaagcaaattaagctaggcgaaaatattattttagatgccatttgttctgtgccc
tatttgattgattttatctacaactacaaagaggctttaatcaaccgcgaaaggcgcgta
aaagagctgtttagaaattttgataatgaagggagcatggctaaaaaagatgaagatgtt
gaaatagaggatagtgaggaagaggacacaccagagattaaaagaaattcctctgataaa
gataaaaagcgggtggaggaagtgcttgaaagttttaaagctttaaacaaggctaaaaaa
gaatggcttaaacttttaaacacacccgtagaggaacaagaagatccacttttacacgcc
ttaactctagcttataaatgccgcgttcttaaagaaaagctctacgatttagggcccact
agcaagcttatcaatgagctagttaaggctatggaaacctcgcttaaaagcgatgatggt
tttgaaaaggaattaaaacggctagaatataaactctctttattcaatgaaagcttgatt
gaaaaccataaaaatatcctcaaaaatatcaccacaatgagccgtgaggaaatcattgcg
atgatgccagaggcaaccatgattggtgtttatatggagattaaaaagcttttccaaact
aaagaagctagtaaggacgggtttaatttagaacctagtaaattaaaagaaattttaagc
caaatcaaacggggcaaattgatttcagacagggctaaaaataaaatggcgcgctctaat
ttgcgcttggtggtgagcattgctaaacgctacacttcacgcgggctaccctttttagat
ctcattcaagagggcaatattggcctgatgaaggccgtagataagtttgagcatgagaaa
aactacaagttttctacttatgccacttggtggatcaagcaggctattagccgcgcgatt
gccgatcaagcccgcacaatccgcattcctatccatatgatagacaccattaaccgcatt
aataaagtcatgcgcaaatacatgcaagaaaatggcaaagagccagatttggatttagtg
gctaaggaggtgggtttgcctctggataaagtgagaaatgtgattaaaatcactaaagag
cccattagtttagaatcgccagtgggtaatgacgatgatggcaagtttggggattttgtg
gaggataaaaatgtggttggttctatggagcacatcatgcgcgaagacttgaaagcccaa
attgatggcgtgcttgatcagctcaatgagcgcgaaaaatcagtgattcgcatgcgcttt
ggtctgttagaagatgagagcgatcgcactttagaagaaattggtaaagagctcaatgta
accagagagcgggtgcgccaaattgaaagcagcgcgattaagaaattgcgcagtcctcag
tatggccgtttgcttagaagttatttgcgtatctga
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