Helicobacter suis: NHP194022_13220
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Entry
NHP194022_13220 CDS
T07888
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hsh
Helicobacter suis
Pathway
hsh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NHP194022_13220 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsh03400
]
NHP194022_13220 (mfd)
Enzymes [BR:
hsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NHP194022_13220 (mfd)
DNA repair and recombination proteins [BR:
hsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NHP194022_13220 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
UvrB_inter
ResIII
Motif
Other DBs
NCBI-ProteinID:
BCD51651
LinkDB
All DBs
Position
1286343..1289303
Genome browser
AA seq
986 aa
AA seq
DB search
MQSSLYFALPSFNSTILVVADNKQAQEALQVWRFFKPHIPVFVLPELRVYYLDDMRAFNT
ELKELLSVLGCFYQSKETNPQTRLIAPLSALLHPLPKPLLLQSFMIECLESYSLAELKEK
FYYYGYDFVDIIELPGEASFRGDIVDIFIPGQTKPHRISFLGQDCEDIRTFDPITQLSDS
ELLEFLEITPALFSLSQENYTLLQERIEKLESSVLIKDIGSLGFWVLEDFGIDFLQHYSA
TLSQKAHLEAKEIFDFNPADNLKHALSLPVLQTPPNCQDIQIHLNQLDTFLQLNAHKRVT
LLAKNIDLIPTHHLNAPFKSVVSDCVLHFSTPDVIFFSLHSYPQKHPFLRPKLILDELSP
GDFVVHENYGVGLFKGLVQQSIFGSVRDFIALEYQNEDMLLLPVENLHLVERYIANNFPV
LDKLGKSSFIKLKAKVHAEILEMASQIINLAAKRYLLEGEKINADSAKLKAFKQACGFTL
TPDQESSITAILEDLAQGRVMDRLLNGDVGFGKTEVAMHAIYAIFLSGKQSAMFVPTTLL
CAQHFNTLQARLEPFNLKVAKLDRFSKDKKEVLEGIKEGRISVVVGTHALLEAKFKDLGL
VVVDEEHKFGVKQKEAIKILSHQVHSLSMSATPIPRTLSMALSKIKGVSTLTTPPANRKP
SRTFVKEKTNPLLKEIILRELRRKGQVFYIHNHIESMPKVKQKLLELLPNLRVEILHSKT
PAKEVEQIMVNFAQGHFEVLLCTSIVESGIHLPNANTIIIEQADRFGLADLHQLRGRVGR
GNKEGFCYYLVEDKNTLGEQASKRLLALEKNSYLGSGASIAMHDLEIRGGGNFLGANQSG
HIKGIGYKLYTKMLEEAISQESGEIQESFSVDLKLQVSGFLSPDLIRSDSLRLELYRRLS
LCLDLASVAAIQSEIHARFGALDLMTTQFLQIIRIKILANQLKIHKISQYGQNITLFFKE
KQKPLQAPSKDDVSVLQTILTALQTL
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgcaatctagcctttattttgctctcccttcttttaacagcacaattttagtggttgca
gataataaacaggctcaagaagctttacaggtgtggcgcttttttaaaccccacattcct
gtttttgtgttgccggagttaagagtttattaccttgatgatatgcgcgcttttaacaca
gaacttaaagagcttttaagcgtattgggttgtttttatcaatctaaagaaacaaaccca
caaacccgtcttatcgctcctttaagcgcgcttttacaccctttacccaaacccttatta
ctccaaagttttatgatagagtgtttagaaagttattctttagcagagttaaaagaaaag
ttttattattatggctatgattttgtagacatcattgaattacccggtgaggcaagtttt
aggggcgatattgtagatatttttatccccggtcaaactaagccacaccgcattagcttt
ttagggcaagattgtgaggatatccgcacctttgatccaattacccagctaagcgattca
gaactcttagaatttttagagatcacgcccgcactcttcagtttaagccaagaaaactac
acgcttttacaagaaaggatagaaaaactagaaagtagcgtattgattaaagatattgga
tcgcttgggttttgggttttggaggattttgggattgattttttacagcactatagcgcc
accttaagccaaaaagcccatttagaggcaaaagaaatttttgattttaaccctgctgat
aatctaaaacatgccctcagcttaccggtgctacaaaccccccctaattgccaagatatt
cagattcatttaaaccaattagacacatttttacaactcaacgcccataaacgcgttact
ttgcttgctaagaatatagacttaatccctacacaccatctaaacgccccctttaaaagt
gttgtttctgattgtgtgctccattttagtaccccagatgtgatttttttctctttgcac
tcctacccacaaaaacacccatttttacgccctaaactcatcttagatgagctaagcccg
ggggattttgtcgtgcatgaaaattatggagtggggctttttaagggccttgtccaacaa
agtatttttggcagtgtgcgcgattttatcgctttagagtatcaaaatgaggatatgttg
ttattgcctgtagaaaatttacacctagtggagcgctacatcgctaataatttccctgtt
ttggataagttaggtaaaagtagttttatcaaacttaaggctaaagtccatgccgaaatc
ttagaaatggcctcacagatcattaatttagccgctaaacgctatttattagagggggag
aaaatcaacgcagatagcgctaaactcaaggcctttaaacaagcctgtggttttactcta
acccccgatcaagagagtagcattacagccattttagaagatctggctcaagggcgcgtc
atggatagattactcaatggcgatgtgggctttggcaaaactgaggtggccatgcatgct
atttatgctatctttttaagtggcaagcaaagcgctatgtttgtccccaccacactttta
tgtgcccagcactttaacaccctccaagcacgcctagaacccttcaatcttaaagtagcc
aagctagatcgctttagcaaggataaaaaggaggttttagaggggatcaaagaggggcgt
atttctgtagtggtgggtacccatgcgcttttagaggctaaatttaaagacttagggtta
gtggtggtagatgaggaacataaatttggagttaagcaaaaagaggcgatcaaaatttta
agccaccaagtgcattctttaagcatgtcagctacccctattccaagaacgcttagcatg
gctctttctaaaatcaagggggtgagcactttaacaacacctccggctaatagaaaacct
agccgtacctttgtgaaggaaaaaacaaaccccctgctcaaagagattattttaagagaa
ttacgccgcaagggacaggttttttatatccataatcatattgaaagcatgcccaaagtc
aaacaaaaacttttagagttactccctaatttgcgtgtagaaattttgcactctaaaact
ccggcaaaagaagtagaacagatcatggttaattttgcacaggggcattttgaagtgctt
ttatgtacttctattgtagagtcaggaattcatttacccaatgctaacaccattatcata
gaacaagccgatcgctttggtttggctgatttgcaccaattaagagggcgcgtaggacgg
gggaataaagaagggttttgttactacttagtagaggataaaaacacactaggagaacaa
gccagtaaaagacttttagccttagaaaagaattcttatttaggtagcggggctagtatt
gccatgcatgatttagaaattagaggcggggggaattttttaggggcaaatcagagcggg
catattaaaggcattggttataagttatataccaaaatgttagaagaggccatttctcaa
gagagtggagagatacaggaaagttttagcgtagatttaaaactccaagtcagtggcttt
ttaagcccggatttaatccgtagcgatagtttgcgtttagaactttatagacggctttct
ttatgccttgatttagccagtgtggctgcaattcaaagtgagattcatgcgcgttttgga
gcgctagatttaatgaccacccagtttttacaaattatccggattaaaattttggctaac
cagcttaaaatccataaaatttctcaatatgggcaaaacatcacccttttttttaaagag
aaacaaaaacctttgcaagcccctagtaaagatgatgtatctgtgttacaaaccattctt
acagctctgcagactctttag
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