Helicobacter suis: NHP194022_14370
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Entry
NHP194022_14370 CDS
T07888
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hsh
Helicobacter suis
Pathway
hsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NHP194022_14370 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsh03019
]
NHP194022_14370 (deaD)
03009 Ribosome biogenesis [BR:
hsh03009
]
NHP194022_14370 (deaD)
Enzymes [BR:
hsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NHP194022_14370 (deaD)
Messenger RNA biogenesis [BR:
hsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NHP194022_14370 (deaD)
Ribosome biogenesis [BR:
hsh03009
]
Prokaryotic type
rRNA helicases
NHP194022_14370 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
AAA_22
Cas3-like_C_2
SUa-2TM
AAA_30
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
BCD51766
LinkDB
All DBs
Position
complement(1397933..1399324)
Genome browser
AA seq
463 aa
AA seq
DB search
MPTNNPEESPVCSFKDLGLHSKILKSIADAGFTGPSPIQEKAIPVILEGKDVIAQAQTGT
GKTAAFALPIIQNLQNDKSIEALIITPTRELAMQISDEIFKLGKSSRTRTICVYGGQSIK
KQCDLLERNPQVMIATPGRLLDHLKNKRLKRFAPRVVVLDESDEMLDMGFLDDIEEIFNY
LPEDAQILLFSATMPAPIKDLANKILQDPVSIHIAPTHVTNADISQRFYVINEHERNEAI
MRLLDKENHSKSIIFMRMKREVDELHQFLSAKGYKTTPLHGDMEQRARRESIKAFKSKLA
DVLVATDVASRGLDISDVSHVFNYHLPLNTESYIHRIGRTGRAGKKGVAITLVTPLEYKE
LQRMQKDIGSSIELYEIPNMNEDRLIQAISKVEVDAEVVSLYEQLTEQFEPSQLVLKLLS
LQFKSYKVDLNQILVEPKPVTRPKKHISKTYKSGRFKDSRRRY
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgccaacaaataaccctgaagaatcccccgtttgttcttttaaagatttgggtttacac
tctaaaatcttaaaatctattgctgatgcgggttttactggccctagccctatccaagaa
aaggccattcctgttattttagagggtaaagatgtgatcgcccaagcccaaaccggtacc
ggcaaaaccgccgcctttgctttgcccattatccaaaacttgcaaaatgataaaagtata
gaggcgcttatcatcacccccacgcgtgagttagctatgcaaattagcgatgaaattttt
aagctaggtaaaagttcacgcacccgcactatttgtgtttatggagggcaaagtattaaa
aagcaatgcgatcttttagagagaaacccacaagtcatgattgctacccccggacgactc
ttagatcatctaaaaaataaacggcttaagcgttttgctcctagagtggtggtgttagat
gagagcgatgaaatgctagacatgggttttttagatgatattgaagagatttttaattac
ttgcccgaagatgcccaaattttgctcttctcagcaaccatgcccgctcccattaaagac
ttagccaataaaatactacaagatccggtatccattcacatcgcccctacccatgtaacc
aatgcagatatttcccagcgtttttatgtgatcaatgaacatgagcgcaatgaggcaatc
atgcgcttactagataaagaaaatcacagcaaaagcattatttttatgcgcatgaaaaga
gaagtagatgagttacaccaatttttaagtgctaagggctataaaaccacgcccttacat
ggcgatatggagcaacgcgcccgccgcgaatctattaaggcctttaaatctaaactcgct
gatgtcttggtggctactgatgtggcgagtcgtggtttagatattagtgatgtgagccat
gtttttaattatcatctacccttaaacacagagagctatatccaccgtatcgggcgcact
gggcgcgcgggtaaaaagggtgtggctatcactctagtaacgcccctagaatataaagaa
ctccaacgcatgcaaaaagacatcggttcttctattgagctttatgaaatccctaacatg
aatgaagatcgcttgattcaggctatctctaaggtagaagtagatgcggaggtggtgagt
ttatacgaacaactcaccgagcaatttgagccttctcagttagtgcttaaactcttgagt
ttacaatttaaaagctataaagttgatttaaatcaaattttagtagaacccaagccggtt
acgcgccctaaaaaacatatttctaaaacttataaaagtgggcgttttaaagactctaga
cgcaggtattaa
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