KEGG   Helicobacter suis: NHP194022_14790
Entry
NHP194022_14790   CDS       T07888                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta/beta' RpoB
  KO
K13797  DNA-directed RNA polymerase subunit beta-beta' [EC:2.7.7.6]
Organism
hsh  Helicobacter suis
Pathway
hsh03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:hsh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    NHP194022_14790 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hsh03021]
    NHP194022_14790 (rpoB)
   03400 DNA repair and recombination proteins [BR:hsh03400]
    NHP194022_14790 (rpoB)
Enzymes [BR:hsh01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     NHP194022_14790 (rpoB)
Transcription machinery [BR:hsh03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     NHP194022_14790 (rpoB)
DNA repair and recombination proteins [BR:hsh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      NHP194022_14790 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb1_3 RNA_pol_Rpb2_7 RNA_pol_Rpb1_4 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 RPOC_hybrid Apocytochr_F_C
Other DBs
NCBI-ProteinID: BCD51808
LinkDB
Position
1435109..1443811
AA seq 2900 aa
METLKNRLRADFTRVPQELQVPNLLFLQKESYEAFLYAKDGKESGIERVFKSVFPIHDSQ
NRITLEYGGYEYGEPKYTVREAMERGITYSVYLKIKIRLILWEKDPKTGEKLGPKDIKEQ
SIFIREIPLMTDRTSFIINGVERVVVNQLHRSPGVIFKEEKSTTSTNKLIYAGQIIPDRG
SWLYFEYDVKDILHVRINKRRKVSATILFRAIGYSKQDIIKIFYPLLKVRHRVINGESKY
YIPFESIMVDSRLDFDLKDEKGQVLLAASKKITAKKAKEIRESGVKWVEYPTKILLNRYL
AEPIMDTNQSVLLDALTLLEQPKLDKIREAGIDAFVIANDLALGHDASIIRSFTSDAESL
RNESLKLLKQSEKIEDESALAAIRIYKVMRPGDPVTTEVAKTYVQQLFFDPERYDLTMVG
RMKMNHKLHLKVPNYVTVLTHEDIIETVKYLIKIKNGQGRIDDRDHLGNRRIRAVGELLS
NELHEGLMKMQKTIKDKLTTMNNALDSLMPHDLVNSKMITSTILEFFMSGQLSQFMDQTN
PLSEVTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFT
RVNDLGFIEAPYKKVVEGHVGEQIEYLTAIQEEGHVIAPASTVVDSKGYIQEDLVETRVG
GEIVLNEKHKVTLMDLSSRILVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSEAPI
VGTGIESVIARDSWGSIKAERKGVVDEVDAGNIYIVEKDPQKGPHITSYLLQKNLRTNQN
TCFNQVPIVKVGDVVEEGQIIADGPSMDKGELALGKNVRVAFMPWNGYNFEDAIVVSEKI
IKEDVFTSVHIYEKEIEARELKHGIEEFTADIPDVKEEEVAHLDSGGIVKIGTYVAPGMI
LVGKVSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIGVKIFTKKGYERD
TRATNAYEEEKWVLDDRHDKHFKMIDKEELLQISDIFSQEPLEEEAVFNEITYPKGSKIP
REVIEGSNRFGLISLAKKYSKEVQDRFEQIKINILEQKKLLGQGHEKKLSILEKDDILPN
GVIKLVKIYIATKRKLKVGDKMAGRHGNKGIVSNIVPIADMPYTADGEPVDIVLNPLGVP
SRMNIGQILEVHLGLVGKELGKQIKALLDSQTKDFIAKLRSKMLEIARVVNVDNQTLAQI
LESCSDTDLLSYARDWSSGVKFAIPVFEGISEEQFMELFKLAKIDLDGKTELYDGRTGEK
MKERVNVGYMYMLKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA
YGAAHTLKEMLTVKSDDIKGRENAYRAIARGEHVGESEIPETFYVLTKELQSLALDVNIF
NEEVDEFGMPKPIVIKEDDRPKDFNSFQLTLASPDKIREWSYGEVKKSETINYRTLKPER
DGLFCMKIFGPTKDYECLCGKYKKPRYKTIGTCEKCGVAITSSKVRSFRMGHIELATPVA
HIWYVNSLPSRIGTLLGIKMKDLERVLYYEAYIVKDPGQVCYDLEGTRPVLKYDILNEEQ
FQSIQRHYSDQDFNAQMGGEIIKELLEELDLVSLLESLKEEVRDTHSDAKKKKLVKRLKV
VESFINSGNRPEWMMLTALPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLI
ELGAPEIIVRNEKRMLQEVVDALFDNGRNANAVKGANKRPLKSLSEIIKGKQGRFRQNLL
GKRVDFSGRSVIVVGPNLKMDECGLPKNMALELFKPHLLAKLEEKGFATTLKQAKRMIEQ
KSTEVWECLEEVVKGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDG
DQMAVHVPLSQEAITECKVLMLSSMNILLPASGKAVAVPSQDMVLGIYYLSLEKSGVLGE
HKLFSSVAEVLIAVDTKELDVHAKVRVLQDRHMLQTTAGRLIIKSILPDFVPAHLWNKVM
KKKDIGALVDFVYKESGIGQTASFLDNLKMLGFRYATKAGISISMEDIITPANKNRMVEV
AKEQVKAIQAQFESGHLSDQERYNKIIDIWTEVNDSMSKEMMEAISKDKEGFNSIYMMAD
SGARGSAAQIRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGARKGLADTA
LKTATAGYLTRKLIDVSQNVKVVQEDCGTHEGIEITDITVGSELIEPLEERIFGRVIVED
ILDPLTNEILFSADTLITEEKAKRIIEAGIKSVIIRTPITCKAQKGVCAKCYGLNLGEGK
MIKPGEAVGVVAAQSIGEPGTQLTLRTFHVGGTASRSQEEREIVAEKEGFVRFFNIETYQ
NKEGHNIITNRRNAAILVVEPKIKAPFDGVLKINNAHEEIFLSVVGEKEAKFTLRKSDVA
KPSELAGVGGKIEGKFYLPYSHDQEVKYGDSIADIIKDSWNVPHRIPYASQIAIQDNEPI
AQNIYAKEKGIVQFYYLEGDHLERFESVRAGEVVQEKGLFAVVVDKNGQEAIRHYIARNS
LMQVGDKSPVETHTLLAKPSVEGKTTIASWDPYNTPIIADKSGVVRFVDIVAGVSVTETE
DENTGMRSLVVNEYITGGLKPSLVIENPNQESIFYPLEPKTSIVVAEGAQVEVADVLAKI
PKATAKSKDITGGLPRVSDIFEARKSKPKDLAILSEMDGQVSFEKPVRNKERICITASDG
RQAEYFIDKGKQILVRPGEFVHAGEAITDGVVSSHDILRISGEKELHKYIVSEVQQVYRR
QGVNIADKHIEIIVSQMLRQVRILDSGNTKFIEGDLVSKKHFREENQRILQAKGEPAIAE
PVLLGITRAAIGSDSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTGL
YKDKKVGVKIEEEQEVIKDT
NT seq 8703 nt   +upstreamnt  +downstreamnt
atggaaactttaaaaaatcggttgcgtgcggattttacaagagtccctcaagaattgcaa
gtccctaatctcttgtttttacaaaaagagagttatgaggcgtttttatacgctaaagat
gggaaagaaagcgggattgaacgggtctttaagtccgtattccccatacacgatagccaa
aatcgtatcaccttagaatatggaggctatgaatatggcgaacccaaatacaccgtgcgt
gaggctatggaaaggggcatcacctattcggtttatctcaaaattaagattcgcttaatt
ttatgggaaaaagaccctaaaacaggagaaaaactaggccccaaagacattaaagaacaa
agcatttttatccgtgaaattcctttaatgacggatcgtacctcttttattatcaatggt
gttgaacgggtggtggttaaccagttgcatagaagccccggggtgatttttaaagaggaa
aaatccaccactagcacgaataaacttatctatgccggtcagattatcccagatcgcgga
tcgtggttgtattttgagtatgatgtaaaagatattttgcatgtgcgcattaacaaacgc
cgtaaagtttctgccacaattttatttagagccattggttatagcaaacaagacattatc
aagattttttaccctcttttaaaagtgcgccatagggtaattaatggcgagagcaaatat
tatattccctttgaaagcattatggtagatagccgccttgattttgatctaaaagatgaa
aaagggcaggttttactagcggctagtaaaaaaatcacggctaaaaaggctaaagaaatt
agagagagtggggttaaatgggtggaatatcccactaaaattttactcaaccgctatttg
gcagaacctattatggatacaaatcaatcagtattgttagatgcactcactcttttagaa
caaccaaaattagacaaaattcgcgaggctggcattgatgcatttgtgattgctaatgat
ctagcattagggcatgacgcctctatcattagatcttttacatcagatgccgagtctttg
cgcaatgaatcgcttaaattactcaaacaaagcgaaaaaattgaagatgaaagtgctttg
gctgcaatccgcatttataaagtcatgcgcccgggtgatccagttacaaccgaagtggct
aaaacttatgtacaacaactcttttttgatccagaacgctacgatttaacgatggtggga
cgcatgaaaatgaatcataaattgcatttaaaagtacccaattatgtaaccgttctaacc
catgaagacatcattgagaccgtcaaatacctcattaaaattaaaaatggacaggggcgt
attgacgatcgcgatcacttaggtaatcgccgtatccgtgcggtgggtgaactgctctct
aatgaattgcatgagggcttgatgaaaatgcaaaaaaccattaaagataagctcaccacg
atgaataatgcattagattcactcatgccccatgacttggttaactctaaaatgattacc
agtacaattttagaatttttcatgagtggccagctctcccagtttatggatcaaacaaat
cccctttcagaagttacgcataaacgccggctttcagctttgggtgaaggtgggcttgtt
aaagatcgtgtgggctttgaggcacgcgatgtacaccccacccactatggccgtatctgt
cctattgaaacccctgaggggcaaaatatcgggcttattaacaccctttctacttttacg
cgggttaatgatttagggtttattgaagcgccttataaaaaggttgttgaggggcatgtg
ggcgaacaaattgagtatttaaccgccattcaagaagaagggcatgtgattgcaccggct
agtacggttgtagattctaaaggttatatccaagaagatttggtagaaactagagtgggg
ggtgaaattgtgcttaatgaaaagcacaaagttaccctaatggatttaagttcgcgcatt
ttagtaggcgtggccgcttctttgatcccctttttagaacatgatgatgctaatcgcgcc
ttaatgggaactaatatgcagcgccaagctgtgcccttattgcgctcagaagcgcctatt
gtagggacaggtattgaaagcgtgattgcacgcgattcatggggcagtatcaaagctgag
cgtaagggcgtggttgatgaagtagatgcgggaaatatttatattgttgaaaaagacccc
caaaaaggcccgcatatcacctcttatttgttacaaaaaaatctacgcaccaaccaaaac
acctgttttaaccaagtacctattgttaaagttggcgatgtggtagaagaaggccaaatt
attgccgatggccctagcatggataagggcgagctagctttaggtaaaaatgtccgcgtg
gctttcatgccatggaatggctataactttgaagatgcgattgtggtgagtgagaaaatc
attaaagaagatgttttcacctccgtacacatctatgaaaaagaaattgaggctagagag
ctcaaacacggtattgaggaatttaccgcagatattcctgatgtcaaagaggaggaggtg
gcgcacttagatagcggggggattgtaaagatcggaacttatgtggccccgggcatgatt
ttagtggggaaagtttcgcctaaaggggaaattaaaagcacacctgaggagcgtttgtta
cgggctatttttggggataaggccgggcatgtggtaaacaagtcgctttactgcccacct
tctttagaggggactgtgattggggttaagattttcactaaaaagggttatgaaagagat
acccgggctactaatgcttatgaagaggaaaaatgggtcttagatgataggcatgataaa
cattttaaaatgattgataaagaggagcttttacaaattagcgatattttctcccaagag
cccctagaggaagaggcggtgtttaatgaaatcacctatccgaaaggctcaaaaatccct
agagaagttatagaggggagtaatcgctttgggttgatttctctagctaaaaagtacagc
aaagaggtacaagatcgttttgaacaaattaagatcaacattttagagcaaaagaaactt
ttaggtcaagggcatgagaaaaaactttctattttagagaaagatgatattttgccaaat
ggggtgattaagctagttaaaatttacatcgccactaagcgcaaattaaaagtaggcgat
aaaatggccggacggcatggcaataaaggcattgtgtctaatattgtacctattgctgac
atgccctatacagctgatggcgaaccggttgatattgtgcttaatcctttgggcgtgcca
agccgcatgaatattgggcaaattttagaggtgcatttagggcttgtgggtaaagagcta
ggcaagcaaattaaagcccttttagatagccagactaaggattttatcgctaaattgcgt
tctaaaatgctagaaattgcccgcgtagtcaatgtagataaccaaactctagcccaaata
ctagaaagctgtagcgatacagatttgcttagctatgctagagattggagttctggggtg
aaatttgctatccctgtttttgagggcatctctgaagagcagtttatggaactctttaag
ctagccaaaattgatttagacggcaaaaccgagctttatgatgggcgtacgggtgaaaaa
atgaaagagcgggtaaatgtaggttacatgtacatgcttaaactccaccacctagtagat
gaaaaagtacatgctagatctaccggcccctattctttagtaacccaccaaccagtgggt
ggtaaagcactctttggcgggcaacgctttggggaaatggaggtgtgggcactagaggct
tatggagcggcacacacgcttaaagaaatgctcacggttaaatcagatgatattaaagga
cgggaaaatgcctatagggctattgctaggggcgagcatgtaggcgaatcagaaattcca
gaaactttttatgtcttgactaaggaattacaatccttagctttagatgtgaatatcttt
aatgaagaagtagatgaatttggcatgccaaaacccattgtgatcaaagaggacgatcgc
cccaaagactttaattccttccaactcaccctagctagcccggataaaatccgcgaatgg
agttatggggaggtgaaaaagtcagagacgattaattaccgcaccctcaaacccgagcgc
gatggactcttttgcatgaagatctttgggcccactaaagattatgaatgtttatgtggt
aagtataaaaagccgcgttataaaaccattggaacttgtgaaaaatgtggggtggctatc
actagctctaaggtgcgatcttttcgcatggggcatattgagttagccactccggtagct
catatttggtatgttaactctctaccaagccgtattggtacacttcttggcattaaaatg
aaagatttagaacgcgtgctttactacgaggcttacattgttaaagatcccggtcaggtt
tgttatgacttagagggtactagacctgtacttaaatatgatattttaaatgaggagcag
tttcaaagtatccagcgccactacagcgatcaagatttcaacgcccaaatgggaggcgag
atcattaaagaactcttagaggaattagatttagttagtttgcttgaatcgcttaaagaa
gaagttagagacacccattcagatgctaagaaaaagaaattagttaagcgtttaaaagtg
gtggaaagctttattaattcaggaaatcgccccgagtggatgatgcttacagctctgcct
gtattgccacctgatttaaggcctttagtggctttagatgggggcaagtttgcggtaagt
gatgtcaatgagctttatagaagagtgattaaccgtaaccaacgactcaaacgattaatt
gagctaggcgcgcctgaaattattgtgcgcaatgaaaaacgcatgctccaagaagtggta
gatgctttatttgataatggacgcaacgctaacgcggttaagggggctaataaacggcca
cttaaatccctttcagaaatcattaagggcaaacaagggcgctttagacaaaatttatta
ggtaaacgggtggatttttcaggccgaagcgtgattgtagtggggcctaatttaaaaatg
gatgaatgcgggttgcctaaaaatatggcgctagaactctttaaaccccatttattagct
aagttggaggaaaagggctttgctactacgcttaaacaagctaagcgcatgattgaacaa
aaaagtaccgaagtttgggagtgtttggaggaagtagtaaagggctatccggtgctttta
aaccgcgcccccactttgcataaacaatctatccaagccttccaccctaaactcattgat
ggtaaggcaatccaattacacccccttgtatgctcagcctttaacgccgactttgatggg
gatcaaatggctgtacatgtgcctttaagccaagaggcgatcacggaatgtaaagtttta
atgcttagttctatgaatattttattgcccgctagtggtaaggctgtagctgtacctagt
caagatatggttttagggatttattacctttctttagaaaaaagtggcgttttaggtgaa
cataagcttttttcaagtgtggctgaggttttaatcgctgtggatactaaagaattagat
gtacacgctaaagtacgggttttacaagatcgccatatgttacaaaccacagccggacgc
ctcattattaaatctattttgccagattttgtgcccgcgcatttgtggaataaagtcatg
aagaaaaaagacatcggggctttggtagattttgtttataaagaaagtggcattggccaa
acggctagctttttagataatctaaaaatgttaggctttagatacgcaactaaagccggg
atttctatctctatggaggatattattacaccggctaataaaaaccgcatggtagaagtg
gctaaagaacaggttaaagcaatccaagcgcaatttgaaagcggacatttaagcgatcaa
gagcgctacaataaaatcattgatatttggacagaagttaatgactccatgagtaaggag
atgatggaggctatttctaaagataaagagggctttaactctatttatatgatggcagat
agcggggcgcgtggttcggctgctcagattcgccaactctctgccatgcgtggcttgatg
actaaaccggacggttctattattgaaacacccattatttctaactttaaagagggcttg
aatgtattagagtactttaactccacacacggggcgcgcaaaggcctagccgataccgca
cttaaaaccgcgacagcgggctatctcacccgtaaactcattgatgtttctcaaaatgtt
aaggtagtacaagaggattgtggcacgcatgaaggcattgagattacagatattactgtg
ggtagtgaactcattgagcctttagaggagcgcatctttgggcgggttattgtggaggat
attttagatccgcttacaaatgaaatactctttagcgcagatactctcatcacagaggaa
aaagccaaacgcattattgaggctgggattaaatctgtcattatccgtacccccataacc
tgcaaggcacaaaagggtgtgtgcgcaaaatgttatggacttaatttaggcgagggcaag
atgattaaaccgggcgaggcagtaggcgtagtagcagcacagtcaattggcgagccgggc
acacaattaaccttaagaactttccatgtgggcggtacagcctccagaagccaagaggag
cgcgagattgtcgctgaaaaagaggggtttgtgcgcttttttaacattgagacctaccaa
aataaagaggggcataacatcatcaccaaccgccgtaacgccgctattttggtggttgag
cctaagattaaagccccctttgatggggtgcttaaaattaacaatgcccatgaggaaatc
tttttaagcgtggtaggagagaaagaggctaagtttaccttgcgtaaaagcgatgtggct
aagccaagcgagttagccggcgtggggggcaagattgagggaaaattctatctaccctat
agccatgatcaagaggttaaatacggcgatagcatcgcagacatcattaaagatagctgg
aatgtgccccaccgcattccctatgcaagccaaattgccattcaagataatgagccaatt
gctcagaatatctatgccaaagaaaagggcattgtgcagttttactatttagaaggggat
catttagaacgctttgagtcagtaagagcgggggaagtggtgcaagaaaaaggcttgttt
gcagtggtggtggataaaaacggacaggaggctattcgccactacatcgctagaaactct
ttaatgcaggtaggcgataaaagcccagttgaaacgcatacgcttttggctaaacctagt
gtagagggcaaaaccacgattgctagctgggacccctacaacacgcccattattgcggat
aaaagcggagtggtgcgctttgtagatattgtagcgggggtaagtgtaactgaaacagaa
gatgaaaatacaggtatgcgatctttggtggtgaatgaatatattaccggggggcttaaa
cctagtttagtgattgaaaaccctaaccaagaaagtatcttttatccgctagagcctaaa
acctctattgtagtagcagagggtgcgcaggtagaagtagccgatgtgctagcaaaaatc
cctaaagctacggctaaatctaaagatattaccggtggtttaccccgcgtttctgatatt
tttgaagcccgtaaaagcaaaccaaaagatctcgctattttaagcgaaatggatgggcag
gtgagctttgaaaaacccgtgcgcaataaagaacggatttgtatcaccgctagcgatgga
agacaagcagagtactttattgataaaggcaagcagattttagtgcggccgggtgagttt
gtacacgctggcgaggctatcactgatggggtggttagtagccatgatattttgcgcata
agcggggaaaaagagctgcataaatatattgtaagcgaggtacaacaggtttatagacgc
caaggggtgaatatcgcagataagcacattgaaatcattgtttcgcagatgttgcgccaa
gtgcggattttagatagcgggaatacaaagtttattgagggggatttagtgagcaagaaa
cattttagggaggaaaaccaacggattttacaggctaagggcgaaccagctattgctgaa
cctgtgttgcttggcattacccgcgcggctattggcagtgatagcattatttcagccgcc
tcgtttcaagaaacaactaaagtgctcacagaggctagtattgcgatgaaaaaggacttt
ttagaggatttaaaagaaaatgtggtgctagggcgcatgattcctgtgggcacggggctt
tataaggataaaaaggtaggggtaaagatagaagaagagcaagaagtgattaaggatact
taa

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