Halobacillus shinanisalinarum: MUO14_16195
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Entry
MUO14_16195 CDS
T09504
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
hshi
Halobacillus shinanisalinarum
Brite
KEGG Orthology (KO) [BR:
hshi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hshi03009
]
MUO14_16195 (rlmD)
Enzymes [BR:
hshi01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
MUO14_16195 (rlmD)
Ribosome biogenesis [BR:
hshi03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
MUO14_16195 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_25
Methyltransf_15
PrmA
MTS
Cons_hypoth95
Methyltransf_11
RrnaAD
UPF0020
Methyltransf_32
N6_N4_Mtase
Methyltransf_23
PCMT
CMAS
Methyltransf_12
TPMT
Motif
Other DBs
NCBI-ProteinID:
UOQ92032
LinkDB
All DBs
Position
3259299..3260678
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AA seq
459 aa
AA seq
DB search
MAKPKPPVQKNETIKLTFEDLTHEGSGVGKVDSYPLFVPYGLPGETAQVKVIKVKKNFGF
GKLLEVDKTSEDRVEPPCDVFYQCGGCQLQHMSYSMQLDMKRNQVKNAMKKIGHLEHVPV
HETIGMDDPWRYRNKIQIPVGQKEDGQLMTGFYQKRSHNIIDMDTCVIQDEMNDRMVESV
RRIASRLGIDAYDEESHRGVLRHIMVRTGQTTKDIMIILVTRTKKLPHKDELIDQLRETF
PNVKSVVHNVNPNKTNIILGKETTVLWGDEYIYDTIGDVKFMISPKSFYQVNPTQTKKLY
DQALQYADLRGGETVIDAYCGIGTISLFLAQKAKKVYGVEIVPEAVTDAKKNARLNKMDN
AEFYVGQAEEIMPWWRNQGLRPDVIVVDPPRKGCDEELLKAMLDMEPERIVYVSCNPSTL
ARDLRVLEDGGYETKEVQPVDMFPQTEHVECVTYLTPKL
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaccaaagccacccgtacagaaaaatgaaaccattaaacttacgttcgaggac
ctcacccacgaaggcagtggggttggaaaagtcgacagctatcccctgttcgtcccctac
ggccttcccggagaaaccgctcaagtcaaagtgataaaagtgaagaaaaatttcggcttc
ggcaaattgctagaggtcgacaaaacaagtgaagatcgagtggagcccccttgtgacgtc
ttctaccaatgcggcggctgtcagttgcagcacatgagctacagcatgcagcttgacatg
aaacgcaatcaagtgaaaaacgctatgaagaaaattggacatcttgagcacgtccccgtt
cacgaaacaatcggaatggacgacccatggcgctatcgtaataaaatacaaattccagtt
ggacagaaggaagacggccaactgatgacaggcttttaccaaaagcgcagccataacatt
atcgacatggacacctgtgtcatccaggatgaaatgaatgaccgcatggtggaatccgta
cgacgtattgccagccgcctgggaattgatgcgtatgacgaagaatcccatcggggtgtg
ttgcgtcacattatggtacgcacgggacaaacgacgaaggatatcatgatcatcctcgta
acccgtacgaaaaagctgccccataaagatgaactgatcgatcaattacgtgaaactttt
ccaaacgtgaagtcggttgttcataatgtgaaccccaataagacaaatatcattttggga
aaagaaacgaccgttctatggggcgatgaatacatttacgacacgattggtgacgtgaaa
ttcatgatctcgccaaaatccttttaccaagtcaacccgacacaaacgaagaagctctat
gatcaagcattacagtatgctgacttgcgcggcggggaaactgtgatcgacgcctactgt
ggtatcggcaccatctctctgttcttagcacaaaaggcgaagaaagtttatggggttgaa
attgttcctgaagcggtcactgacgctaagaaaaatgcccgtttgaataagatggataac
gctgaattttatgtaggacaagccgaagaaatcatgccgtggtggcgtaaccaaggatta
cgtccagacgtgattgttgttgatccgccaaggaaaggctgtgatgaggagttgttgaaa
gccatgctggatatggagccggagcggattgtctatgtgtcctgtaatccatcgacgctt
gcgcgtgatttgcgtgtgcttgaggatgggggttacgagacgaaagaggttcagcctgtt
gatatgtttcctcagacggaacatgttgagtgcgttacctatttaacccctaaattatag
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