KEGG   Halomonas aestuarii: BOX17_01920
Entry
BOX17_01920       CDS       T04554                                 
Name
(GenBank) RNA polymerase factor sigma-54
  KO
K03092  RNA polymerase sigma-54 factor
Organism
hsi  Halomonas aestuarii
Pathway
hsi02020  Two-component system
hsi02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:hsi00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    BOX17_01920
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    BOX17_01920
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hsi03021]
    BOX17_01920
Transcription machinery [BR:hsi03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     BOX17_01920
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID
Other DBs
NCBI-ProteinID: APE29829
UniProt: A0A1J0VCS1
LinkDB
Position
427397..428821
AA seq 474 aa
MAMKASLQLRVGTQLTMTPQLQQAIALLQLSTLDLRQEIQQALESNPLLDVEDEFGEQAV
SETPDDDWASEIPEELTTDSDWSDTYQDLGTAPAGGSGEGPDFERQASGQSLQGHLAWQL
AMTDLDERQMRIAESLIDSINGDGYLTQPLEEIRDGLRTQGLAGLRSREVEQVLLRLQQF
EPTGVFARDLRECLLLQLATLPDDTPLLPQARRLVRQFLEALAGDDRRLLKRRLGLDDAA
LDTVIDLVRSLDPRPGSAFTESDSDYVIPDLVARHTREGWQVELNPEAMPRLRIQPDYAA
LIRRADKSDDNQFLKDHLQEARWLMKSLSSRNDTLLRVGREIMVRQIDFLEHGEEAMKPL
ILADIAQVVEMHESTISRVTTQKFIHTPRGMFELKYFFSSQVGGGNGEGDAHSSTAIRAR
IRKLIQDEPPRKPLSDSRLVALLEEAGISVARRTVAKYREAMGIPSSSERKRLR
NT seq 1425 nt   +upstreamnt  +downstreamnt
atggccatgaaggcttccctgcagcttcgcgtcggcacccagctgaccatgacgccccag
ctgcagcaggccatcgccctgctgcagctctcgaccctggaccttcgccaggagatccag
caggcgctggagtccaaccccctgctggacgtcgaggacgagttcggcgaacaggcggtg
agcgagacgcccgacgacgactgggccagcgagatccccgaggaactcaccaccgatagc
gactggtccgacacctaccaggacctcggcaccgcccccgccggcggcagcggcgagggc
cccgacttcgaacgccaggcgtcgggccagagcctgcagggccacctggcctggcagctg
gccatgaccgacctcgacgagcgccagatgcgcatcgccgagagcctgatcgacagcatc
aacggcgacggctatctcacccagcccctggaagagatccgggacggcttgaggacccaa
ggcctcgcgggcctgaggagccgggaagtcgagcaggtgctcctgcgcctccagcagttc
gagcccaccggcgtcttcgcccgggacctgcgcgagtgcctgctgctgcagctggccacc
ctgcccgatgacacgcccctgctgccccaggcccgccgcctggttcgccagttcctcgag
gcgctcgcgggcgacgaccgccgcctgctcaagcgccggctcggcctcgacgacgcggcc
ctcgacacggtgatcgacctggtgcgctcgctggatcctcgccccggcagcgccttcacc
gagagcgacagcgactacgtgatccccgacctcgtcgcgcgtcatacccgcgaggggtgg
caggtggaactcaatcccgaggccatgccgcgcctgcgcatccagcccgactacgccgcc
ctgatccgacgcgccgacaagagcgacgacaaccagttcctcaaggaccacctgcaggaa
gcgcgctggctgatgaagagcctctccagccgcaacgacacgctgctgcgggtgggccgc
gagatcatggtgcgacagatcgacttcctggagcatggcgaggaggccatgaagccgctg
atcctggccgatatcgcccaggtcgtggagatgcatgaatcgacgatctcgcgggtcacc
acccagaagttcatccataccccgcgcggcatgttcgagctcaagtacttcttctccagc
caggtggggggcggcaacggcgagggcgacgcccactccagcaccgccatccgcgcccgg
atccgcaagctgatccaggacgagcccccgcgcaagccgctttccgacagccggctggtc
gcgctgctcgaggaagccggcatcagcgtcgcgcgccgcacggtggcgaaatatcgcgag
gcgatgggcatcccctcctccagcgagcgcaagcggttgcgttga

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