Halomonas aestuarii: BOX17_01920
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Entry
BOX17_01920 CDS
T04554
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
hsi
Halomonas aestuarii
Pathway
hsi02020
Two-component system
hsi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hsi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BOX17_01920
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BOX17_01920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsi03021
]
BOX17_01920
Transcription machinery [BR:
hsi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BOX17_01920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
APE29829
UniProt:
A0A1J0VCS1
LinkDB
All DBs
Position
427397..428821
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AA seq
474 aa
AA seq
DB search
MAMKASLQLRVGTQLTMTPQLQQAIALLQLSTLDLRQEIQQALESNPLLDVEDEFGEQAV
SETPDDDWASEIPEELTTDSDWSDTYQDLGTAPAGGSGEGPDFERQASGQSLQGHLAWQL
AMTDLDERQMRIAESLIDSINGDGYLTQPLEEIRDGLRTQGLAGLRSREVEQVLLRLQQF
EPTGVFARDLRECLLLQLATLPDDTPLLPQARRLVRQFLEALAGDDRRLLKRRLGLDDAA
LDTVIDLVRSLDPRPGSAFTESDSDYVIPDLVARHTREGWQVELNPEAMPRLRIQPDYAA
LIRRADKSDDNQFLKDHLQEARWLMKSLSSRNDTLLRVGREIMVRQIDFLEHGEEAMKPL
ILADIAQVVEMHESTISRVTTQKFIHTPRGMFELKYFFSSQVGGGNGEGDAHSSTAIRAR
IRKLIQDEPPRKPLSDSRLVALLEEAGISVARRTVAKYREAMGIPSSSERKRLR
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggccatgaaggcttccctgcagcttcgcgtcggcacccagctgaccatgacgccccag
ctgcagcaggccatcgccctgctgcagctctcgaccctggaccttcgccaggagatccag
caggcgctggagtccaaccccctgctggacgtcgaggacgagttcggcgaacaggcggtg
agcgagacgcccgacgacgactgggccagcgagatccccgaggaactcaccaccgatagc
gactggtccgacacctaccaggacctcggcaccgcccccgccggcggcagcggcgagggc
cccgacttcgaacgccaggcgtcgggccagagcctgcagggccacctggcctggcagctg
gccatgaccgacctcgacgagcgccagatgcgcatcgccgagagcctgatcgacagcatc
aacggcgacggctatctcacccagcccctggaagagatccgggacggcttgaggacccaa
ggcctcgcgggcctgaggagccgggaagtcgagcaggtgctcctgcgcctccagcagttc
gagcccaccggcgtcttcgcccgggacctgcgcgagtgcctgctgctgcagctggccacc
ctgcccgatgacacgcccctgctgccccaggcccgccgcctggttcgccagttcctcgag
gcgctcgcgggcgacgaccgccgcctgctcaagcgccggctcggcctcgacgacgcggcc
ctcgacacggtgatcgacctggtgcgctcgctggatcctcgccccggcagcgccttcacc
gagagcgacagcgactacgtgatccccgacctcgtcgcgcgtcatacccgcgaggggtgg
caggtggaactcaatcccgaggccatgccgcgcctgcgcatccagcccgactacgccgcc
ctgatccgacgcgccgacaagagcgacgacaaccagttcctcaaggaccacctgcaggaa
gcgcgctggctgatgaagagcctctccagccgcaacgacacgctgctgcgggtgggccgc
gagatcatggtgcgacagatcgacttcctggagcatggcgaggaggccatgaagccgctg
atcctggccgatatcgcccaggtcgtggagatgcatgaatcgacgatctcgcgggtcacc
acccagaagttcatccataccccgcgcggcatgttcgagctcaagtacttcttctccagc
caggtggggggcggcaacggcgagggcgacgcccactccagcaccgccatccgcgcccgg
atccgcaagctgatccaggacgagcccccgcgcaagccgctttccgacagccggctggtc
gcgctgctcgaggaagccggcatcagcgtcgcgcgccgcacggtggcgaaatatcgcgag
gcgatgggcatcccctcctccagcgagcgcaagcggttgcgttga
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