Halomonas aestuarii: BOX17_10035
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Entry
BOX17_10035 CDS
T04554
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hsi
Halomonas aestuarii
Pathway
hsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BOX17_10035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsi03021
]
BOX17_10035
03019 Messenger RNA biogenesis [BR:
hsi03019
]
BOX17_10035
Transcription machinery [BR:
hsi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BOX17_10035
Messenger RNA biogenesis [BR:
hsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BOX17_10035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
AAA_25
NACHT
AAA_22
AAA
Fungal_virus_P2_C
Motif
Other DBs
NCBI-ProteinID:
APE31255
UniProt:
A0A1J0VGW7
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Position
2170813..2172072
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AA seq
419 aa
AA seq
DB search
MNLTELKQKPVPELLEIAREMGIDNLARSRKQDIIFAILKKHAKSGEPIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRKGDSISGKIRPPKEGERYFALLKVSEIN
FDKPENAKHKILFENLTPLFPQERLRMEIGNGSTEDLTARIIDLTAPIGKGQRGLLVSPP
KAGKTLMLQNIATSITRNNPECHLIVLLIDERPEEVTEMSRTVRGEVVASTFDEPPARHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMEAHLDRKLAERRVYPAINI
RRSGTRREDLIASEDEMQRMWILRKLLNPMEDTAATEFLIDRLKDTKTNLEFFEAMKRR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaactcaagcaaaagccagttccggagcttctggagatcgcccgcgag
atgggcatcgacaacctggcgcgttcccgcaagcaggacatcatcttcgccatcctcaag
aagcatgccaagagcggtgagccgatcttcggtgatggcgtgctggagatcctgcaggat
ggattcggctttctgcgcagtgccgacagctcctacctggccggtcccgatgacatctat
gtctcgccctcgcagatccgtcgcttcaacctgcgcaagggcgactccatctccggcaag
attcgcccgccgaaggaaggggagcgctacttcgcgctgttgaaggtcagcgagatcaac
ttcgacaagccggaaaacgccaagcacaagatcctcttcgagaacctcacgccgctgttc
ccccaggagcggctgcgcatggagatcggcaacggctccaccgaggacctcaccgcccgc
atcatcgatctcaccgcgcccatcggcaagggccagcgcggactgctggtctccccgccc
aaggcgggcaagaccctgatgctgcagaacatcgccacctccatcactcgcaacaacccc
gagtgccacctgatcgtgctgctgatcgacgagcgccccgaggaggtgacggagatgtcg
cgcaccgtgcgcggcgaggtggtggcctcgaccttcgacgagccgccggcccgtcacgtg
caggtggccgagatggtcatcgagaaggccaagcgactggtcgagcacaagaaggacgtg
gtgatcctgctcgactccatcacgcgtctggcccgtgcctacaacaccgtggtgccgagc
tccggcaaggtgctcaccggcggtgtcgacgcccatgccctggagaagcccaagcgcttc
ttcggcgcggcgcgcaacatcgaggagggcggcagtctgaccatcatcgccacggcactg
gtcgacaccggctccaagatggacgaggtgatcttcgaggagttcaagggcaccggcaac
atggaggcccacctcgaccgcaagctggccgagcgtcgcgtctatccggcgatcaacatc
cgccgcagcggcacccgccgcgaggacctgatcgcctccgaggacgagatgcagcgcatg
tggatcctgcgcaagctgctcaaccccatggaggacacggcggccaccgagttcctgatc
gaccgcctgaaggataccaagaccaacctggagttcttcgaggccatgaagcggcgttga
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