Haloarcula marismortui ATCC 33800: KDQ40_06340
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Entry
KDQ40_06340 CDS
T07272
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hsin
Haloarcula marismortui ATCC 33800
Brite
KEGG Orthology (KO) [BR:
hsin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hsin03016
]
KDQ40_06340
Enzymes [BR:
hsin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KDQ40_06340
Transfer RNA biogenesis [BR:
hsin03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KDQ40_06340
Prokaryotic type
tRNA splicing ligases
KDQ40_06340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QUJ73363
UniProt:
M0K0G5
LinkDB
All DBs
Position
1242997..1244460
Genome browser
AA seq
487 aa
AA seq
DB search
MVLELTGEHTTARVMVDDESLVESGCREQIETLIDHPAFTEPVRIMPDTHWGAGAPIGFT
MPLSERVVPNIVGVDVGCGMAATNLGPELPLEDAERERRVREAVPMGQSVHDYDDAVHFV
EEFPFERANRIFEQFDTAYAEVFGEHIDPVEFDFNGYDGEYFESLCDRVLADQRQGMGYI
IKSAGTLGGGNHFVEFGQARESGDYWLVIHSGSRYLGKSVAEYWQSTATDRRTIGEIRDQ
LPEEYVEYLKFDPDTVESRDLYAWVTGGMGESYIRKDRLRRELDGKEIENAFDALGQVQD
AIHSSDDEDRNTDLDWLEGREAHGYLVDMLFAQQYARWNRELMSDAVCDALGVDPVDRFQ
SIHNYIDFRDLTIRKGATPARDGQRLLVPFNMADGSIIARGKGNDEYHQTAPHGAGRVMS
RRRAHSEVDMDEFAEAMDGIYSESVIKGVRDEAPMAYKDADAILSAIQPTAEVVEYVDAV
HNLKATE
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggtactcgaactgacgggcgaacacaccacagcacgggtgatggtcgacgacgaatcg
ctcgtcgagagcgggtgtcgggagcagatcgagacgctcatcgaccatccggcgttcact
gagccggttcgaatcatgccggacacgcactggggggccggcgcacctatcggctttacg
atgccgttgagcgagcgcgtcgtgccgaacatcgtcggcgtcgacgtggggtgtggaatg
gccgcgacgaaccttggcccggaactcccgctagaagacgctgaacgcgagcgacgcgtc
cgtgaggcggtcccgatggggcagtcggtccacgactacgacgatgcggtccacttcgtc
gaagagttcccgttcgagcgggccaaccgcatcttcgagcagttcgacacggcctacgcc
gaggtgttcggcgaacacatcgaccccgtcgagttcgacttcaacggctacgacggagag
tacttcgagtcgctgtgtgaccgcgttctggctgaccagcgccagggcatggggtacatt
atcaagagcgcggggacgctgggcggcgggaaccacttcgtcgagttcggccaggcccgc
gagtcgggtgactactggctggtcatccacagcggttcccggtatctgggtaagtccgtc
gccgagtactggcagtcgacggcgacggaccgccgaacaatcggcgagatccgcgaccag
cttcccgaagagtacgtcgagtacctgaaattcgaccccgatacagtcgaatcccgcgac
ctctacgcctgggtcactggcggcatgggcgaatcctacatccggaaggaccgcctccgc
cgcgaactggacggcaaggagatcgagaacgccttcgacgccttaggacaggttcaggac
gccatccacagcagcgacgacgaggaccgcaacacggacttagactggctggagggtcgc
gaggcccacggctacctcgtcgatatgctgttcgcccagcagtacgcccgctggaaccgc
gaactgatgagcgatgccgtctgtgacgcccttggcgtcgaccccgtcgaccgcttccag
tcgattcacaactacatcgacttccgtgacctcactattcgcaagggagcgacgcccgct
cgcgacggacagcggttgctggtcccgttcaacatggccgacgggtcgattatcgcacgc
gggaagggcaacgacgagtaccaccagacagcgccacacggtgcgggccgtgtgatgagc
cgccggcgggcccacagcgaggtcgatatggacgagttcgccgaagcgatggacggtatc
tactcggagtccgtcatcaaaggcgtccgggacgaagcgccgatggcgtacaaggacgcc
gacgcgatactctcggctatccagcccactgccgaggtcgtcgagtacgtcgacgccgtc
cataatctgaaggcaactgagtga
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