Haloarcula marismortui ATCC 33800: KDQ40_09320
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Entry
KDQ40_09320 CDS
T07272
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hsin
Haloarcula marismortui ATCC 33800
Pathway
hsin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KDQ40_09320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsin03019
]
KDQ40_09320
Messenger RNA biogenesis [BR:
hsin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KDQ40_09320
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RMMBL
Motif
Other DBs
NCBI-ProteinID:
QUJ70927
UniProt:
M0JTY3
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All DBs
Position
complement(1833421..1834767)
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AA seq
448 aa
AA seq
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MEVEIATIGGYEAVGRQMTAVRAGDDVVIFDMGLNLSKVLIHDNVETERMHSLDLIDMGA
IPDDRVMSDLEGDVKAIVPTHGHLDHIGAISKLAHRYDAPIVATPFTIELVKQQIKSEEK
FGVQNDLVKMDAGETMSIGERNELEFVNVTHSIIDAINPVLHTPEGAVVYGLDKRMDHSP
VIGDPIDMKRFREIGREGEGVLCYIEDCTNAGKKGRTPSESVARRHLKDVMDSVADYDGG
IVATTFSSHIARVKSLVEFADDIGRQPVLLGRSMEKYSGTAERLDFVDFPEDLGMYGHRK
SVDRTFKRIMNEGKENFLPIVTGHQGEPRAMLTRMGRGETPYELDDGDKVLFSARVIPEP
TNEGQRYQSEKLLGMQGARIYDDIHVSGHLREEGHYEMIDALQPKNIIPAHQSLEGFAPY
VDLAENMGYKAGRDLHITRNGNMIKLTE
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggaagtcgaaattgcgacaattggcggttacgaggctgtaggccgacagatgacggcc
gtccgtgcaggggacgacgtcgtcatcttcgacatgggcctgaacctctcgaaggtactg
attcacgacaacgtcgagacggaacggatgcactcgctggacctcatcgacatgggtgcc
atcccggacgaccgggtcatgtccgacctggaaggcgacgtgaaggctatcgtcccgaca
cacggtcacctggaccacatcggcgcgatatccaagctcgcccaccgctacgacgcacct
attgttgcgacgcctttcaccatcgaactcgtcaaacagcagatcaagagcgaggagaag
ttcggcgtccagaacgacctcgtgaagatggacgccggcgagacgatgtccatcggcgag
cgcaacgaactggagttcgtcaacgtcacccactccatcatcgacgctatcaaccccgtt
ctccacacgccggaaggcgcggtcgtctacgggctggacaagcggatggaccactcgccg
gtcatcggcgaccccatcgacatgaagcggttccgcgagatcggccgcgagggcgagggc
gtcctctgttacattgaggactgtacgaacgcgggcaagaagggacgtacgccttccgaa
tccgtggcacgtcgccacctcaaagacgtgatggacagcgtcgccgactacgacggcggt
atcgtcgcgacgacgttctcctcacacatcgctcgtgtcaagagcctcgtcgagttcgcc
gacgacatcggccgccagccggtgctgctcggtcgctcgatggagaagtactccggcacc
gccgaacgactcgacttcgtcgacttcccggaagacctcggaatgtacggccaccgcaag
tctgtcgaccggacgttcaagcggatcatgaacgagggcaaggagaacttcctcccgatc
gtcactggccatcagggcgagccacgcgcgatgctcacccggatgggccgcggcgagacg
ccctacgagctagacgacggcgacaaggtcctcttctcggctcgggtcattccggagcca
accaacgagggccagcgctaccagtccgagaagctgctgggcatgcagggcgcgcgtatc
tacgacgatatccacgtttcgggccacctccgcgaagagggccactacgaaatgatcgac
gcgctccagccgaagaacatcatcccggctcaccagagcctcgaagggttcgcaccgtac
gtcgacctcgcggaaaacatgggctacaaagccggacgggacctccacatcacccgcaac
ggcaacatgatcaagctcaccgagtaa
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