Hymenobacter sediminicola: H4317_00145
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Entry
H4317_00145 CDS
T09117
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hsk
Hymenobacter sediminicola
Pathway
hsk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H4317_00145 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsk03019
]
H4317_00145 (rnr)
03016 Transfer RNA biogenesis [BR:
hsk03016
]
H4317_00145 (rnr)
Enzymes [BR:
hsk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
H4317_00145 (rnr)
Messenger RNA biogenesis [BR:
hsk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H4317_00145 (rnr)
Transfer RNA biogenesis [BR:
hsk03016
]
Prokaryotic type
tRNA degradation factors
H4317_00145 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
CSD
Motif
Other DBs
NCBI-ProteinID:
QNH62279
UniProt:
A0A7G7W7D6
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All DBs
Position
complement(27031..29538)
Genome browser
AA seq
835 aa
AA seq
DB search
MKRKDDSAAPRADRAKAAAGSHDAAPITKDIVFRIFRDNPGKVFAYRQISRRLGVTTKEQ
REDIFAHLKALKNAGMLTLLQNDEYRLTDSAAADAATVPASSRRARNTDNTPVPARRSIR
PPEADFGQDPVVHRRREAGFDFPDADGATETRRRRDSHAETIVGTVALATDKFAFVISEE
SESDVRVFTDRLKFAMHGDTVRLRLRGSRDGRPVGDVVEVLKRVRPEVVGRLQVRGGIGF
VKPDNRKMYFDVFVPFENLHGAVDGEKVLVRVTEFPEDDAGRSPLGEVVRSFGQAGGNEA
EINAIMAEFGLPFEFPAEVEEESESISDVIPPAEIERRRDFRHITTFTIDPADAKDFDDA
LSIQKLENGHWEIGVHIADVTHYVRPGTALEQEAKHRATSVYLVDRVIPMLPERLSNGLC
SLRPNEDKLTFSAVFELDENGKLYESWFGKTIIHSDRRFAYEEAQERIEGLDSDYTTEIQ
LMNSIAKKLCATRFKQGAISFETQEVKFRLDENGKPLGVYVKERKDAHKMIEEFMLLANR
KVAEFVFKLKARKPRFTMVYRVHEAPDPDRLQTFALFAKKFGHNLDLANPKKISTELNDL
SMEVMGRPEQNVIQTLAVRTMSKAIYTTEPLGHFGLAFDHYSHFTSPIRRYPDMMAHRLL
EHYLEGGKNVEVEPVEEECKHSSEREKVAASAERASIKYKQVEFMSEVIGETFTGVVSGL
TERGMYIEIEENKCEGMVRLSEIPGDHFELDRDNYRIVGQRSKRIIQFGDELQVIVKSAN
LLDRTIDFELVDNRPDAVKQRELQERRENSRPRGYRPERSSGGRPGGDNKGKRRR
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaaaagacgactccgccgccccccgcgccgaccgcgcgaaggcagccgctggc
agccatgatgctgcccctattaccaaagacatcgtattccgcatcttccgcgacaacccc
ggtaaggtctttgcctaccgccagatttcgcgccgcctcggcgtgacaaccaaggagcag
cgcgaagacatatttgcccatctgaaggcgttgaaaaacgccggcatgctcacactgctg
caaaacgacgagtaccgcctcacggactccgccgctgctgatgcggctacagtgcccgcc
agtagccgtcgggcgcgcaacaccgataacacaccggtgcctgctcgccgcagcatccgg
ccccccgaagccgacttcggccaagaccctgtggtgcaccgccgccgcgaggccggcttc
gactttcctgatgccgacggtgccaccgaaacccgccgccgccgcgactcccacgccgaa
accatcgtcgggaccgtggcgctggctaccgacaagtttgccttcgtgatttcggaggaa
agcgaaagtgacgtgcgcgtgttcacggaccggttgaagtttgccatgcacggcgacacc
gtgcgcctgcgcttgcgcggctcccgcgacggccgccctgtcggcgacgtggtagaagtg
ctcaagcgggtgcgccccgaggtggtaggccgcctgcaggtgcgcggcggcatcggcttc
gtgaagcccgacaaccgcaagatgtacttcgacgtgtttgtgcctttcgagaacctgcac
ggcgccgtagatggcgagaaagtgctggtgcgcgtcacggagtttccggaggatgatgcc
ggccggtcgccgctgggtgaagtggtgcgcagcttcgggcaggccggcggcaacgaagcc
gagataaatgccatcatggccgagttcgggctgccgtttgaatttccggctgaggtagag
gaggagtcggaatctatttccgatgtcatcccgcctgctgagattgagcgccgccgcgac
ttccgccacatcaccaccttcaccatcgacccagccgacgccaaggacttcgacgatgct
ttgagtatccagaagctggaaaacggccactgggaaatcggggtgcacatcgccgacgtg
acgcactacgtgcggcccggcacggccctggagcaggaagccaagcaccgcgctacatcg
gtctacctcgtagaccgggtgattccgatgctaccggagcgcctctccaacggcctctgc
tcgttgcgccctaacgaggataaactgaccttctcggccgtgtttgagctcgacgaaaac
ggcaagctctacgagtcgtggttcggcaaaaccatcattcactccgaccgccgcttcgcc
tatgaggaagcgcaggagcgcatcgaagggctggactcggactacaccaccgaaatccag
ctcatgaacagcattgccaagaagctgtgcgcaacccgcttcaagcaaggcgccatcagc
ttcgagacgcaggaggtgaagttccgtctggacgagaacggcaagccgctgggcgtgtac
gtgaaggagcgcaaggacgcgcacaagatgattgaggagttcatgctactcgccaaccgc
aaggtggctgagttcgtgttcaagctcaaggcccgcaagccgcgcttcacaatggtgtac
cgcgtgcacgaagcccccgacccggaccgcctgcagacctttgcgctgttcgccaagaaa
tttggccacaacctcgacctggccaacccgaagaagatcagcaccgagctgaacgacctc
tcgatggaggtaatgggccggcccgagcagaacgtgattcagaccctggccgtgcgcacc
atgagcaaggccatttataccaccgagccgctgggccacttcggtctggcctttgaccat
tactcacacttcacctcacccatccgtcgctaccccgatatgatggcgcaccgcctgctg
gagcactacctggaaggtggcaagaacgtggaggtggagcccgtggaagaagagtgcaag
cactcctcggaacgcgagaaagtagcggcctccgccgagcgcgccagcatcaaatacaag
caggtggagtttatgtcggaggtgattggcgagacgttcaccggggtagtgtcgggcctg
acggaacgcggcatgtatatcgaaattgaggaaaacaagtgcgaaggcatggtgcgcctg
agcgagattcccggcgaccatttcgagctggaccgcgacaactaccgcatcgtggggcag
cgcagcaagcgcatcatccagttcggcgacgagcttcaggtgattgtcaaatcggccaat
ctgctcgaccgtactatcgacttcgagctggtagataaccgtcccgatgcagtgaagcag
cgcgagctacaggagcgacgcgagaacagcaggccccgcggctaccgccccgagcgcagc
agcggcggccgccctggtggcgacaacaaaggcaagcgccgccggtag
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