Hymenobacter sediminicola: H4317_04045
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Entry
H4317_04045 CDS
T09117
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
hsk
Hymenobacter sediminicola
Brite
KEGG Orthology (KO) [BR:
hsk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsk03019
]
H4317_04045 (hrpB)
Enzymes [BR:
hsk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
H4317_04045 (hrpB)
Messenger RNA biogenesis [BR:
hsk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
H4317_04045 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
CON_HrpB
ResIII
AAA_30
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QNH62991
UniProt:
A0A7G7W9E8
LinkDB
All DBs
Position
complement(938708..941302)
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AA seq
864 aa
AA seq
DB search
MNFPDLPIVAALPGLLTALAAHERVVLQAPPGAGKTTVVPLALLDAAWRDGGKILMLEPR
QLAARAAATRLAKLLGEPVGETVGYRVRLESKVSARTRIEVITEGILTRLIQDDPALEGV
AAVIFDEFHERSLRADLGLALALDAQAVLRPELRILVMSATLEAERMGTWLQAPVVSSAG
FLFPVETHYLSPRQAAAGGSRPAERLATLVPTAVREALRQHPDGDLLVFLPGLADLRRVA
EKLESTLSNEVHLHLLHGELPLAEQDAALRPVPAGQRKIVLSTAISETSLTIEGVKVVID
GGFARVPRFQARTGFSTLETVPVSQAAADQRRGRAGRLGPGTCYRLWTTTEHDALPAYLP
PEILTADLSSLALELALWGSAPQNLRWLDAPPAPALALANDLLRRLGAVMGDEVNGDGVN
SESPGSPPQKPTPHGRALARLGLAPRLGHLVVRGHELGHGPAAAALAALLSERDVLRAAD
AHPTPPDLRLRFEAIAHGRAPLPGLLVQHHILHRVRDAARNLRQRAGIRENATSADADAA
GLLTALAYPDRVAQRETADRVRLATGQRVALPAEHFGRDDQFLAVAYLDGPPHQLRAALA
APVSRPELEELFKEQIEATDEVRWDAATGRVLARRRRRLGALVLSDVALPQPDPALVAAT
LLEALRTEGIARLPWSEAGTALRERLAFLHQQFSDTWPDVSDETLLAELEDWLEPQLMGL
KSLQEVSRLNWPELLLQRLPGGWNQRQELDRLAPSHLEVPSGSHVALDYSDAAAPVLAVK
LQEVFGLLDTPRIAQGRVPLTLHLLSPGGRPAQVTRDLRSFWQHGYFEVRKDLRGRYPKH
PWPDDPLSAIPTKLTKKRFEAGQS
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgaacttccccgacctcccgatagtagccgcgctgcccggcctactcacggcgctggct
gctcatgagcgagtagtgctgcaggctccgcctggcgccggcaaaaccaccgtggtaccg
ctggcgctgctggatgccgcgtggcgggacggaggcaaaatcctgatgctggagccgcgg
cagctggcggcccgcgccgccgctactcgcttggccaagctgctgggcgagccggtgggc
gaaaccgtaggctaccgcgtgcggctagaaagcaaggtatcggcccgcacccgcatcgaa
gtcattacggaaggcatcctgacgcgcctcattcaggacgacccggcgctggaaggcgtg
gcggccgttattttcgacgagtttcatgagcgcagcctccgcgccgacctggggttggcg
ctggccctcgatgcgcaggccgtgctgcggcccgaactgcggattctggtgatgagtgcc
acgctggaagccgagcggatgggcacctggctgcaggctccggtagtgagcagcgccggg
tttctgtttccagtggagacgcactatctgagcccgcgccaagcagcggccggcggctcg
cgtcccgccgagcggctggctacgctggtgcccacggccgtgcgcgaagccctacgccag
caccccgacggcgacctgctggtattcctgcctggtctcgccgacctgcgccgcgtggcg
gaaaagttggaatcgactttatccaatgaggtgcacctgcacttgctgcatggcgagctg
ccgctggccgagcaggatgccgcgttgcgccccgtgccggctgggcagcgcaaaattgtg
ctcagcaccgccatttccgaaaccagcctcaccattgagggcgtgaaagtggtgattgac
ggtggttttgcgcgggtgccgcgctttcaggcccgcaccggcttcagcaccctcgaaact
gtgcccgtgagccaggctgctgccgatcagcgccggggccgcgccgggcgcctcggcccc
ggcacctgctaccgcctctggactaccactgagcacgacgcgctaccggcctacctgccg
cccgaaattcttactgccgaccttagcagcctggccctggagctggccctctggggttct
gccccgcaaaacctgcgctggctcgatgcgccgcccgctcctgccttggccctcgccaac
gacctgctacgccgtctgggagcggttatgggtgatgaggtaaatggtgatggagtgaat
agtgaatcgcccggctcacctccccaaaagcctacgccgcatggtcgggcgctggcgcgg
ctggggctggcgccgcggctcggccacttggtagtgcgcgggcatgagctgggtcacggt
ccggccgctgccgcattggcggcgctgctttcggagcgcgacgtgctgcgggctgccgac
gcccaccccaccccacccgacctgcgtctgcgcttcgaggccattgcgcacggccgggca
ccgctaccaggcctgctggtgcagcaccacattctgcaccgcgtccgtgatgccgcccgc
aacctgcgccagcgcgccggaatccgggaaaatgctacttctgctgatgccgatgcagcc
ggtctgcttacggccctcgcctatcccgaccgggtggcgcagcgcgaaaccgctgaccgg
gtgcgcctggccaccggccagcgcgtggccctgcccgccgagcatttcggccgcgacgac
caatttctggccgttgcctacctcgatgggccaccgcaccagttacgcgccgcgctggcg
gcccccgtgagccggccggaactggaagaattatttaaggagcagattgaagccacagac
gaagtgcgctgggatgccgctacgggccgcgtgctggcccgccgccgccgccgattgggc
gccttggttctttcagatgtagccttgccccaacccgatccggccctggtagccgcaacg
ctgctagaggcgctgcgcaccgaaggcattgcgcggctaccctggagtgaggctggcacc
gcgctacgggagcggctggcgtttctgcatcagcagttttcggatacctggcccgatgtg
tcggacgaaacgttgctggcggagctggaggactggctggaaccgcagctcatgggcctg
aaaagtctgcaggaagtgagccggctgaattggccggagctcctactgcagcggttgccc
ggcggctggaaccagcgccaggagctggaccgcctcgcgccctctcacctcgaagttccc
agcggctcccatgttgcgctggactattctgatgctgctgcgcctgtattagctgtgaag
ctgcaggaagtgtttggcctgctcgatacgccgcgtattgcgcaaggaagagtgccgctc
accctacatctgctttcgccgggcggccggccggcccaagtcacgcgggatttgcgcagc
ttctggcaacacggctactttgaggtgcgcaaagacctgcgcgggcgctaccccaaacac
ccctggcccgacgacccgctctcggctattccaaccaagctcactaagaagcgtttcgaa
gccggccaatcctag
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