Hymenobacter sediminicola: H4317_04695
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Entry
H4317_04695 CDS
T09117
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hsk
Hymenobacter sediminicola
Pathway
hsk03030
DNA replication
hsk03430
Mismatch repair
hsk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hsk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H4317_04695 (dnaE)
03430 Mismatch repair
H4317_04695 (dnaE)
03440 Homologous recombination
H4317_04695 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hsk03032
]
H4317_04695 (dnaE)
03400 DNA repair and recombination proteins [BR:
hsk03400
]
H4317_04695 (dnaE)
Enzymes [BR:
hsk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
H4317_04695 (dnaE)
DNA replication proteins [BR:
hsk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
H4317_04695 (dnaE)
DNA repair and recombination proteins [BR:
hsk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
H4317_04695 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QNH63111
UniProt:
A0A7G7W9R8
LinkDB
All DBs
Position
complement(1093398..1097081)
Genome browser
AA seq
1227 aa
AA seq
DB search
MPVFSHLHSHTQYSLLDGQASISALMKKAQADGMPAVALTDHGNMFGAFNFVAEANKYNV
KPIVGCEFYMVEDRHKKAFSREKGERDKRYHQLLLAKDQAGYHNLSKLCSMSFIEGVYSK
FPRIDKELLLKYHKGLIATSCCIGAEIPQAILFQSEAKAEELLKWWLDVFEDDYYIEIQR
HGLMNFDGTGKSQEDVNQVLLNLARKYNVKVICTNDSHYVEQTDFAPHDILLCVNTGEEH
SIPVGDFQTQYFRLISQDNKVHYDHLDNLRHLSGQDATIRRQLQRIDEEAQSPKPRARFG
FANDQFYFKNQAEMNALFADVPESVDNTNEIVDKITPPVLQRDILLPNFPLPPEHPTADA
FLRHLTFKGAFEGPKARYSERTPEIEERLDYELRVIETMGFAGYFLITQDFINHGRNNGV
AIGPGRGSAAGSAVAYCIGITNIDPIKYSLLFERFLNPERVSMPDIDIDFDDVNRQRVID
YVVDKYGKTQVAQIITFGTMAAKSSIKDVSRAMELPLPVANDLVKMVPEQVGTTLAKAFA
ENQELDMIRRDDAPDNLRGQILRLAEKLEGSVRNTGIHAAGVIIAPDDITKYIPVSTSKD
SDLLITQFDGKVIESAGMLKMDFLGLKTLTIIVDAINLIEKNHGVKIDIDEIPIDDQKTY
ELYQRGDTIGTFQFESEGMRMYLKDLKPTNIEDLIAMNALYRPGPMQFIPNFINRKHGRE
TVDYPHELLEPILNYSQGIMVYQEQIMQTAQILAGYSLGGADLLRRAMGKKDMKKMALER
EKFCAGAEKLHGIKAKKANEVFDVMEKFAAYGFNRSHSAAYSVVAYQTGYLKAHYPAEYM
AAVLTNNMGDIKKVTFFIEEARKQGVAVLGPDVNESILKFNVNAQGQIRFGMAAMKGSGE
AAVEEIVQERDKNGPYGDIFDFARRVNLRAVNKKTFESMAQAGAFDSFERYHRRQFLEAP
GGDQNLIEKAMKVGQQHQAAKESAQQSLFGGGGGEMAIPMPKIHDLEPWSPTEKLRREKE
IVGFYLSGHPLDDFKLEIDSYCTCGLDKIENYKNRDVTVAGLISNVLFKTTKTGQPFVSF
NVEDYDSSLNLALFRDDYTKFSSIINPRNYDKEQVPPMFIRGKYAQRFRDSDQFEFKIMT
MEPLFNVAEKLANGVRVQLDLRTITEPFMDRFMEAVEGCSGSKKLEIKFAEPHEHLAVDT
YSRRYRIEPKEFIRKMREMEIDACQLI
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgcccgttttctcgcacctccactcgcacacccaatattctctgcttgatggtcaggcc
agcatttcggccctgatgaagaaggctcaggccgatgggatgccggccgtagccctcacc
gaccacggcaacatgttcggggcgttcaactttgtggccgaggccaacaagtacaacgtg
aagccgattgtgggctgcgagttctacatggtggaggaccgccacaaaaaggccttcagc
cgcgaaaagggcgagcgggacaagcgctaccatcagctgctgctggccaaggaccaggcc
ggctaccacaacctgagcaagctctgctcgatgagctttatcgagggcgtgtacagcaag
ttcccgcgcatcgacaaggaactgctgctcaagtaccacaagggcctgattgccacctcc
tgctgcattggcgcagaaattccgcaggccatcctgttccagagtgaggccaaggccgag
gagctgctcaagtggtggctcgacgtgttcgaggacgactactacatcgaaattcagcgg
cacgggctgatgaacttcgacggcaccggcaaaagccaggaagatgtaaaccaggtgctg
ctgaacctggcccgcaagtacaacgtcaaggtcatctgcaccaacgactcgcactacgtg
gagcagactgacttcgcgccccacgatattctgctctgcgtgaatactggcgaggagcac
agcatcccggtcggcgacttccagacccagtatttccgcctgatttcccaggacaacaag
gttcactacgaccacctcgacaacctgcgccacctttccggccaggatgccaccatccgc
cgccagctgcagcgcatcgacgaggaggcccaaagccccaagccccgggcccgcttcggt
ttcgccaacgaccaattctacttcaaaaaccaggcggagatgaacgcgctgttcgccgac
gtgccggaaagcgtggacaacacgaacgaaatcgtggacaaaattacgccgccagtcctg
cagcgtgatattctgctacccaatttccccctgcccccggagcaccctacggctgatgct
ttcctgcgccacctcaccttcaaaggagcgtttgaagggccgaaagcccgctactctgag
cgcacccccgaaattgaggagcgcctggactacgaactgcgcgtgattgagacgatgggc
tttgcgggctacttcctcatcacgcaggatttcattaaccacggccgcaacaatggcgtg
gccatcgggccgggccggggctcggcggcgggctcggcggtggcctactgcatcggcatc
accaacattgacccgattaagtactcgctgctgttcgagcgtttcctgaacccggagcgg
gtgtcgatgcccgatatcgacattgacttcgacgacgtgaaccgccagcgagtcattgat
tatgtggtagataagtacggcaaaacccaggtagcccagattatcaccttcggtacgatg
gccgccaaatcgtcgattaaggacgtttcgcgggctatggagctgccgctgccagtggcc
aacgacttggtgaagatggtaccggagcaggtgggcacgaccctggccaaggcctttgcc
gaaaaccaggagttggacatgatccggcgcgatgacgcgcccgacaacctgcgcgggcag
attctgcgcctggccgagaagttagaaggctcagtgcgcaacaccggcatccacgccgcc
ggcgtcatcattgcccccgacgacatcaccaagtacatccccgtttccacttccaaggat
tcggacctgctcatcacgcagttcgatggcaaggtgattgagagtgctggcatgctcaaa
atggactttctgggcctcaaaaccctgaccatcatcgtcgatgccatcaacctgattgag
aaaaaccacggagtcaaaatcgacatcgacgaaattccgattgacgaccagaaaacctac
gaactctaccagcgcggcgacaccatcggcacgttccagttcgagagcgagggtatgcgc
atgtacctcaaggacctcaaaccgaccaacatcgaggacctgattgccatgaacgccctg
taccgcccaggcccgatgcagttcattccaaacttcatcaaccgcaagcacggccgcgag
acggtggactacccccacgagctgttggagcccattctgaactactcgcagggtatcatg
gtgtaccaggagcagatcatgcaaacggcccagatcctggccggctactcgctcggcggc
gccgatttgctgcgccgggccatgggcaaaaaggacatgaagaagatggccctggagcgg
gagaagttctgcgcgggcgctgagaagctgcacggcatcaaggccaaaaaggccaacgag
gtgttcgatgtgatggagaagtttgcggcctacggcttcaaccgctcccactccgcggcc
tactcggtggtagcctaccagaccggctacctcaaggcccactaccccgccgagtacatg
gccgccgtgctcaccaacaacatgggcgacatcaagaaggtaaccttcttcattgaggaa
gcccgcaagcagggcgtggctgtgttgggccccgacgtgaacgaatccatcctgaagttc
aacgtaaacgcccagggccagatccgcttcggcatggccgctatgaagggctcgggcgag
gcagccgtggaggaaatcgtgcaggagcgcgacaaaaacggcccctacggcgacatcttc
gactttgcccggcgcgtgaacctgcgggccgtaaacaagaaaaccttcgagagcatggcc
caggccggcgccttcgattcgtttgagcgttaccaccgccgccagtttctggaagcacca
ggtggtgaccagaacctcattgaaaaggccatgaaggtgggccagcagcaccaggctgcc
aaggaatcggctcagcagagcctgtttggcggcggcggcggcgaaatggccattccgatg
cccaagattcacgacctggagccctggagcccgaccgagaagctgcgccgggaaaaggaa
attgtgggcttctacctctccggtcacccgctcgacgacttcaagctcgaaatcgactcc
tactgcacctgcgggctcgataagatagagaattacaaaaaccgcgacgtaacggtagcc
ggcctgatttccaacgtgctgtttaagactaccaagaccgggcagccctttgtgtcattc
aacgtggaagactacgactcgtcgcttaacctagccttgttccgcgacgactacactaag
ttttccagcattatcaacccccgcaactacgacaaggagcaagtgccacccatgttcatc
cgcggcaagtatgctcagcgcttccgcgactccgaccagttcgagttcaagatcatgacc
atggagcctctgttcaacgtggccgagaagctcgccaacggcgtgcgcgtgcagctggat
ctgcgcaccatcacggagcccttcatggaccgttttatggaagccgtggaaggctgctca
ggctccaaaaagctggaaatcaagttcgccgagccccacgagcacctggccgtggacacc
tactcccgccgctaccgcatcgagcccaaggagttcatccgcaaaatgcgcgaaatggaa
atcgacgcctgccagctgatttag
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integrated database retrieval system
