Hymenobacter sediminicola: H4317_04805
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Entry
H4317_04805 CDS
T09117
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hsk
Hymenobacter sediminicola
Pathway
hsk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H4317_04805 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsk03021
]
H4317_04805 (rho)
03019 Messenger RNA biogenesis [BR:
hsk03019
]
H4317_04805 (rho)
Transcription machinery [BR:
hsk03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
H4317_04805 (rho)
Messenger RNA biogenesis [BR:
hsk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
H4317_04805 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
AAA_25
ATPase_2
AAA_22
NACHT
DDRGK
Motif
Other DBs
NCBI-ProteinID:
QNH63133
UniProt:
A0A7G7W9U0
LinkDB
All DBs
Position
1123818..1125962
Genome browser
AA seq
714 aa
AA seq
DB search
MYTIEELKDRLLSDLKEIAEELNVGNFKKLSKQDLIYKILDQQAVLPADKLPLKVKPAAK
ARLEPAFSDVAAPTTAADVAVAPAPRPVAVRSRAAKAPAAKTATVAAEPSAPIAEPLVAP
APVEAPALIAAPATEVAAEPAVAAERPVKPYQRPERRTRENTGRGSRIAGAAEESAAAMP
SQAAELTAVASPAQVVADVVETAVPAETVATETAPAPRIFRPERQESLPRPLRDQPRERE
GRDGRDLRNGSSDVARPTDIPRELRPDQQPRTDRPERDPNRPLRDQTRTDRPERDGLRPE
RDSNRPDREQRREDRYAAREQQRQQRQEGGQQQQPQQRPRNDFDIVIEGEGTLEMMPDGG
YGFLRSPFYNYLSSPDDIYVAPQQVKQFSLKAGDTVKCTIRPPREGEKYFALVGVETING
RAVEEARDRVPFSSLTPLFAEERLKLSTKSSQYSTRILDLFAPIGKGQRGLIVAQPKTGK
TVLLQEIANAISENHPEVYLMILLIDERPEEVTDMARSVKAEVLSSTFDETADRHVKIAS
IALDKAKRLVECGHDVVILLDSITRLARAYNTVQPASGKILSGGVDANALHKPKRFFGAA
RNVENGGSLTIIATALIETGSKMDEVIFEEFKGTGNMELQLDRKLANKRIFPAIDVPASG
TRREDLLMSKEELSRIWVLRKFMADMTPAEAMEFLKDRMKGTRDNSEFLLAMNG
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgtacactatcgaagagttaaaagaccgtttgctttctgatctgaaagaaattgcggaa
gaactcaacgttggcaacttcaagaaattaagcaagcaggatctgatttataagattctc
gatcagcaggccgtattgcctgccgacaagcttccccttaaagtaaaaccagctgccaaa
gcgcgtctggagccggctttttctgacgtagccgccccaacaacagctgccgatgttgcg
gttgcgccggccccacggcccgttgcggtccgctcgcgcgctgccaaagcgccggccgcc
aaaactgctactgtagccgctgagccatctgcacctattgccgagcccttggtagcaccc
gctccggtagaggcacccgcactcattgctgctcctgctacggaggtagccgctgagcct
gcagttgctgccgagcgcccggtaaagccatatcaacggcctgagcgccggacccgggag
aatacgggccgtggcagccgcattgccggcgctgccgaagaatcggccgcagctatgcct
tcccaggctgctgagctgactgctgtggcatcaccagcccaagtagttgctgatgtagta
gaaacagcagttcctgctgaaactgttgccaccgaaacggctcccgctccccgcattttc
cgccccgagcgccaggaatcattgccacggccgctacgtgaccagccccgtgagcgggaa
ggccgcgacggacgggacctgcgcaacggtagcagcgacgtggctcgcccgacggatatt
ccgcgcgagttacgccccgaccagcagcctcgtacagaccgcccagagcgggacccaaac
cgcccgttgcgagaccagacccgcacagaccgtccggagcgggatggccttcgcccagag
cgtgacagcaaccgccctgaccgggagcagcgccgtgaggaccgctacgccgctcgggag
cagcagcggcagcagcgccaggaaggcggccagcaacaacagcctcagcagcgtccccgc
aacgattttgatatcgtgatagagggcgagggcacgctggaaatgatgcccgatggtggc
tacggtttcctgcgcagcccgttctacaactacctttcctcgcccgacgacatttatgtg
gcgccgcagcaggtgaagcagttctcgctgaaagccggcgacacggtgaaatgcactatt
cgtccaccgcgtgaaggggagaagtattttgcactggttggcgtagagaccatcaacgga
cgggccgtggaagaagcacgtgaccgggtgcctttcagcagcctcacgccgcttttcgcg
gaagagcgcctgaagctttccaccaaatcaagccagtacagcacccgcatcctagacctg
tttgcccctatcggcaaaggccagcggggcctgattgtggcgcagcccaaaaccggtaag
acggtgctgctgcaggaaattgccaacgccatcagcgaaaaccaccccgaggtgtacctg
atgattctgctgattgatgaacgcccggaagaagtaacggatatggcccgctcggtgaaa
gccgaagtgctcagttccaccttcgacgaaaccgctgaccgccacgtgaaaattgccagc
attgcgctagataaggccaagcgcctcgtagagtgtggccacgatgtcgtgattctgctc
gactcgattacgcgcctggcgcgggcttacaatacggtgcagcccgcttccggcaagatt
ctctcgggtggtgtagatgccaatgcactgcacaagcccaagcgtttctttggggcggcc
cgcaacgtggaaaacggtggctcgctcaccatcattgccaccgccctcatcgaaaccggc
tccaagatggacgaggtaatctttgaggaattcaaaggtactggcaacatggaactgcag
ctggaccgcaaactggccaacaagcgcattttccccgccatcgatgtgccggcttccggt
acgcgccgcgaagacttgcttatgagcaaggaagagctgagccgtatctgggtgctgcgc
aaattcatggccgacatgacgcccgctgaagccatggagttcctcaaagaccgcatgaaa
ggtacccgtgacaacagcgaatttctgctggctatgaacgggtaa
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