Hymenobacter sediminicola: H4317_07615
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Entry
H4317_07615 CDS
T09117
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hsk
Hymenobacter sediminicola
Brite
KEGG Orthology (KO) [BR:
hsk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hsk03016
]
H4317_07615
Enzymes [BR:
hsk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
H4317_07615
Transfer RNA biogenesis [BR:
hsk03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
H4317_07615
Prokaryotic type
tRNA splicing ligases
H4317_07615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QNH63653
UniProt:
A0A7G7WBB0
LinkDB
All DBs
Position
complement(1796538..1797968)
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AA seq
476 aa
AA seq
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MATSKLRGNDLRKIGFPEGRATTLALNILEDRQLKTLDKGSALALLQKIKADPYAYLRDS
LWRELAKEFVPDPKRDVTLNSEIKDYRRYGEAFIEDGARRQMDTAMQLPVTLDGALMPDA
HQGYGLPIGGVLAVDNAVIPYGVGMDIGCRMALSVFPVPSHYLDQHTQELKKLLHNHTRF
GGKEVFKNPTDDPILERPEFREIAVVRGKRDAAYNQLGSSGSGNHFVEWGVVEITDDDND
LDLAPGQYLGLLSHSGSRGLGAAIAQHYTKVAMSKCPLPPEARYLAWLDLDSQEGQEYWA
AMNLAGDYASACHRDIHRRLSQALGEKPLAKVENHHNFAWKETLPDGREAIVHRKGATPA
GKGVLGVIPGSMTAPGFIVRGRGERDSIQSASHGAGRRMSRTQAKQNLSEGDVRRHLRDH
GIELIGGGLDEAPMAYKDIHQVMAHQRDLVDVLGSFTPRIVRMDAGGGGKSRYGGE
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggccacctccaaactgcgcggcaacgacttacgcaaaataggcttccccgaaggccgc
gccaccacgctggcactcaacattctggaagaccgccaactcaaaaccctcgataaaggc
agcgcgctggcgttgctccagaaaattaaagccgacccgtatgcctacctgcgcgactcg
ctgtggcgggagctggcgaaggaattcgtgcccgaccccaaacgcgacgtgacgctcaac
tccgaaatcaaggactaccgccgctacggcgaggcgtttattgaggacggtgcgcgccgc
cagatggacaccgccatgcagctccccgtgacgctggatggcgccctgatgcccgatgcg
caccagggctacggcctgcccatcggaggcgtgctggccgttgacaatgccgtgattccc
tacggcgtgggcatggatattggctgccggatggcgctgtcggtgtttccggtgccgtcc
cattatctggaccagcatacacaggaactgaaaaagctgctgcacaaccacactcgtttc
ggcggcaaggaagtgttcaagaatccgactgacgaccctattctggagcgtcccgagttc
agagaaattgcggtggtgcgcggcaagcgcgacgcggcctacaaccagctcggctcgtcg
ggctccggcaaccacttcgtggagtggggcgtcgtcgaaatcaccgacgacgacaacgac
ttggacctggcgcccggccagtatctggggctgctttcgcactccggttcgcgggggctg
ggcgcggccattgcgcagcactacaccaaagtggccatgagcaagtgcccgctgccgccc
gaagcccgctacctggcctggctcgacctcgacagccaggaaggccaggaatactgggca
gccatgaacctggccggcgactacgcctcggcctgccaccgcgacatccaccgccgccta
agccaggcgctgggcgaaaagccgctggccaaagtagagaatcaccacaactttgcctgg
aaagaaacgctgcccgatggccgggaagccatagtgcaccgcaagggcgctacgccggcc
ggaaaaggagtgctgggagtcattccgggctcgatgacggctcccggctttattgtgcgg
gggcgcggcgagcgggactccattcagtcggcttcgcatggggcgggccgcagaatgtcg
cgcacccaggccaagcagaacctttccgaaggcgacgtgcgccgccacctgcgcgaccat
ggtatcgagctgattgggggcgggcttgacgaggccccgatggcctacaaagacattcat
caggtgatggcccaccagcgcgacctagtggatgtgctgggctctttcacgccgcgcatc
gtgcgcatggatgccggcggcggaggcaaaagccgctatggcggtgagtaa
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