Hymenobacter sediminicola: H4317_07745
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Entry
H4317_07745 CDS
T09117
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hsk
Hymenobacter sediminicola
Brite
KEGG Orthology (KO) [BR:
hsk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hsk03016
]
H4317_07745
Enzymes [BR:
hsk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
H4317_07745
Transfer RNA biogenesis [BR:
hsk03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
H4317_07745
Prokaryotic type
tRNA splicing ligases
H4317_07745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QNH63678
UniProt:
A0A7G7WBD5
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All DBs
Position
1829183..1830586
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AA seq
467 aa
AA seq
DB search
MASQLRGNDLRQLGFPEGRAIGLALAQLQRKHLKKLSQTDQLTLLKDLLDTPTNYLTHLD
WSHTAAALLPAPSRHIALAARKDYAVFGAEYIEQGAIHQMETAMKLPVTVAGALMPDAHH
GYGLPIGGVLATDNAVIPYAVGVDIGCRMALSVFALPPKHLEQRVQELRKLLLEHTRFGN
KQGFQRGQKLDHAVLERDEFRDIGFLRNKQATAAEQIGTSGGGNHFVEWGVVDITDPSNE
LGVPVGQYLGLLSHSGSRGLGASVANHYTKLAKDVCQLPAEAQHLAWLSLESEAGQEYWA
AMNLAGDYASACHHQIHQRLAKALGERPLAKMENHHNFAWKEHLADGRKVIVHRKGATPA
GKGVLGIIPGSMTAPGFIVRGRGEAASLSSASHGAGRAMSRTRAKLELGEAEVRRYLQQH
HIELIGGGVDEAPQAYKDIRAVMASQTELVDVLGSFTPRIVRMEGGS
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atggcctcacaactacggggcaacgaccttcgccaacttggatttcccgaaggccgtgcc
attggcttggcgctggctcaattgcagcgcaagcatctcaaaaaactttcacaaaccgac
cagctcacgctactcaaagacctgttggataccccaacgaactacctcacacacctcgac
tggagccatacagctgctgcgctgctgcccgcgcccagccggcacattgccctggccgcc
cgcaaagactacgccgtgttcggggccgaatacatcgagcaaggcgccatccatcagatg
gaaacggccatgaaactgcccgtcacggtggctggggctcttatgcccgatgcccaccac
ggctacggcctgcccatcgggggcgtgctggctactgataatgccgtgattccctacgcc
gtgggtgtggacatcgggtgccggatggcgttgtcggtgtttgcgttgccgcccaagcac
ctagaacagcgggtgcaggagctacgcaagctgctactggagcatactcgtttcggcaac
aagcagggtttccagcgcggccagaaactagaccatgcagtgctggagcgcgacgaattc
cgggacatcgggtttctgcgcaacaagcaggctactgctgccgagcagattggcacctcc
ggcggcggcaaccacttcgtggagtggggcgtcgtcgacatcaccgacccttcaaacgag
ttgggggtgccggtgggccaatatctggggctactttcgcactccggctcccgggggcta
ggcgcgagtgtggctaaccactacaccaagctcgccaaagatgtgtgccagctgcctgcc
gaagcgcagcacctggcttggctttccctggaaagtgaggccgggcaggaatactgggcg
gctatgaacttggccggtgactacgcttcggcttgccaccaccagattcatcagcggctg
gctaaagccttgggcgagcgtccgttggcgaaaatggaaaaccaccacaactttgcctgg
aaagagcacctcgccgacggacgcaaagtcattgtgcaccgtaagggcgctacgccggcc
ggcaaaggcgtgctgggtatcattcccggctcgatgacggctcccggctttattgtgcgg
gggcggggtgaggcggcttcgctgtcgtcggcttcgcacggggccggccgggctatgtcc
cggactcgtgccaaactggagctgggcgaagccgaagtccggcgctacctgcagcagcac
catatcgagctgattggcggtggcgttgacgaagctccgcaggcctacaaggacatccgg
gccgtgatggccagccagacagaactggtggatgtgctgggctctttcacgccgcgtatt
gtgcgcatggaaggtggctcctga
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