Hymenobacter sediminicola: H4317_08560
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Entry
H4317_08560 CDS
T09117
Name
(GenBank) L,D-transpeptidase family protein
KO
K21470
L,D-transpeptidase YcbB
Organism
hsk
Hymenobacter sediminicola
Brite
KEGG Orthology (KO) [BR:
hsk00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
hsk01002
]
H4317_08560
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
hsk01011
]
H4317_08560
Peptidases and inhibitors [BR:
hsk01002
]
Cysteine peptidases
Family C82
H4317_08560
Peptidoglycan biosynthesis and degradation proteins [BR:
hsk01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
H4317_08560
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Scaffold
YkuD
PG_binding_1
Oxidored_q5_N
Motif
Other DBs
NCBI-ProteinID:
QNH63831
UniProt:
A0A7G7WBT8
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Position
2025125..2026933
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AA seq
602 aa
AA seq
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MNSSFRPAFLTTLLFWLLGLTMLASASSCSQEQKEKIKDALPGGPAKAGGPQPTLDSVYI
VKYMSAEPKFKDQIEWGKKFYRERNFRLGWFRNHELVPQAKTMLGVLNKAADEGLDPKEY
KTKDFDKLFADLEAAQSDSTKRNTLEKEIDVALSGTYFNWASDFYRGTVDPRAVKTIDWQ
VKRNKIKLHKALMTILKERESTYPYYEFEPLHPEYDQLKKALAEYRALQRNGGWATIPAT
TKLKPGQTSPAVAALRQRLLGTKAPATAPVAATPAAATDPAATPARTVANKPDNTGTAVP
AAAAPGEKYDAELVQAVKSFQTQNGLNPDGVVGGETLRLLNIPVAQRIDQLILNMERWRW
IPKRFEPSYLLVNIPDYKLHMIENNKEVFDMRVIVGKALNATPVFSDKMEYVVLAPYWNV
PYSIIDKELRPKLAANAQATLDRLDMEVVKGSGAKATPIDPNSIDWANLTPATWKYTLRR
RPGPMNDLGDVKFIFPNSNDVYLHDTPHDELFSQAKRGFSHGCVRVAEPLKLAEYLLRNK
PGWDMMKIEETIAGREEKYVSLPEHLPVYLVYFTSWVDDAGNVHFRDDIYGHDKSLAKEY
FN
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgaattcatcatttcgtccggctttcctgactactctgctgttctggcttctgggcctc
acgatgctggcctctgcctcgtcgtgcagccaggagcagaaggagaaaatcaaggacgcc
ctgcctggtggcccggccaaagccggtggcccccagccaaccctcgacagcgtgtacatc
gtgaagtacatgagtgccgagcccaagtttaaagaccagattgagtggggcaagaagttt
taccgggagcgaaatttccgcctcgggtggttccgtaaccacgagctagtgccgcaggct
aagaccatgctgggcgttctgaacaaggccgccgacgaaggtcttgatcctaaagaatat
aagaccaaggactttgataagcttttcgctgatctggaggctgcccaatctgactctacc
aagcgcaacacgctggagaaggagatagatgtagctctgtccggcacgtatttcaactgg
gcttccgatttctaccggggcaccgtagacccacgcgctgtcaagaccattgactggcag
gtgaagcgcaacaaaatcaagctgcacaaggctttgatgacgatcctgaaagagcgcgaa
agcacgtacccgtattacgagttcgagccgctgcatccggaatatgaccagttgaagaag
gccctagcagaataccgtgcgctacagcgcaatggcggctgggctactatcccggcaact
accaagctcaagccgggccagacctctccggccgtagcggcattgcgccagcgcctgctg
ggcaccaaggctccggcgactgcgcctgttgccgccacaccagctgccgctactgacccg
gccgctactccggcccgcacagtagcgaacaagccggacaacacgggcactgccgttccg
gccgcagccgcgcccggtgagaaatatgatgccgagctggtgcaggcagtaaagtcgttc
cagacacaaaacggcctcaacccggatggggtagtagggggcgaaacgttacgtttgctt
aacattccggtagcccagcgcatcgatcaactaatcctgaatatggagcggtggcgctgg
attccgaagcgcttcgagccgagctatctgctcgtaaatatccccgactataaactccac
atgattgaaaacaacaaggaggttttcgacatgcgggttatcgtagggaaggccctcaat
gccaccccggtcttcagcgacaagatggaatacgtggtgctggcgccttactggaacgtg
ccctacagcatcatcgataaggagcttcgcccgaagctggcggccaatgcacaggccacc
ctcgaccggctcgatatggaagtggtgaagggttccggtgctaaggctactcccattgat
cctaatagcatcgactgggccaacttaactccggccacctggaagtacacgctgcgtcgt
cggccaggacctatgaatgacctcggcgacgtgaagttcatcttccctaattccaacgac
gtgtacctacacgacaccccgcacgacgaattgttcagccaggccaagcggggatttagc
catggctgcgtgcgggtagcggagccactgaagctggccgaatacctgttgcgcaacaag
cccggctgggacatgatgaagatcgaagaaaccatagccggtcgggaggagaagtatgta
agcctgcctgagcatctgccggtctacctagtgtacttcacgtcttgggtagacgacgcc
ggaaacgtgcatttccgagatgatatatatgggcatgataaatcactggctaaagaatac
ttcaattaa
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