Hymenobacter sediminicola: H4317_10870
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Entry
H4317_10870 CDS
T09117
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hsk
Hymenobacter sediminicola
Brite
KEGG Orthology (KO) [BR:
hsk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hsk03032
]
H4317_10870 (topA)
03400 DNA repair and recombination proteins [BR:
hsk03400
]
H4317_10870 (topA)
Enzymes [BR:
hsk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
H4317_10870 (topA)
DNA replication proteins [BR:
hsk03032
]
Prokaryotic type
DNA Topoisomerases
H4317_10870 (topA)
DNA repair and recombination proteins [BR:
hsk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
H4317_10870 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
PadR
Motif
Other DBs
NCBI-ProteinID:
QNH60696
UniProt:
A0A7G7W2V3
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All DBs
Position
2555857..2558346
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AA seq
829 aa
AA seq
DB search
MVKNLVIVESPAKAKTIEGYLGKDFVVKSSFGHVRDLPKDNNAIDIANGFKPTYVVSADK
REIISQLKKLAKEAETVWLASDDDREGEAISWHLAETLNLTGGGKTRRIVFREITKNAIL
AAIENPREIDLNLVNAQQARRVLDRLVGFELSPVLWKKVKTGLSAGRVQSVAVRLVVERE
REINQFKVSSAYRVTARFDAGKGAVLEADLPTRYKTREEAEAFLTRCVGADYRIENLEKK
PGKRSPAPPFTTSTLQQEASRKLGFSVAQTMSVAQKLYEAGKISYMRTDSVNLSQDALTA
AQEEISRAYGPEYAQTRIYKTKSASAQEAHEAIRPTDFALVKAGSDSQEQRLYDLIRKRA
MASQMADAQIERTVATIGISTQPGTMLTATGEVITFEGFLKAYAESKDEETQDDDASQES
SFSRGLPPLTVGQQLPLQLLRAVERYAAPAARYTEASLVKKLEEMGIGRPSTYAPTISTI
QKRGYVEKDTREGKERKFHVLTLDGSEVKTEVKTETYGADKAKLFPTDTAMVVNDFLVEH
FPVIVDYQFTAKVEGEFDRIADGEELWTDMLAGFYGTFHETVERGKDIERNTLGSNREIG
VHPETGQKLTARLGRFGPYVQIEPKEGAPEDEKAVYASLRKGQFIENITLEEALELFKLP
RIVGEFEDKSMTAALGRFGPYIRHDSKFYSLTKEQDPHTITAQEGIDLIEAKRKTDAERL
IKAFPDREDVQVLNGRFGPYIVVGKKNVKIPKGEEPADLTLERCLELADATPDKPAKGGR
FAKKAPAADPKDAADKPAKKAAAKKPAAKKPAAKKAAGTTAKKATAKSK
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggtcaaaaatctagtcatcgtcgaatcccccgcgaaagccaaaaccatcgaaggctat
ctggggaaggacttcgtcgttaagtcatccttcggccacgtccgtgacctgccgaaggat
aataacgccatcgatattgccaatggcttcaagcctacatatgtggtgtcggcggataag
cgcgaaatcatcagccagctcaagaaactggcgaaagaagccgaaacagtgtggctggcg
agtgacgatgaccgggagggagaagccatttcctggcatctggccgagacgctcaacctg
accggtggcggcaagacgcgccgcatcgtgtttcgcgaaatcacgaagaacgccatcctg
gcggccattgaaaacccgcgggaaattgacctgaacttagtgaacgcccagcaggcccgc
cgggtactcgaccggctagtaggctttgagctgagcccggtgctgtggaagaaagtaaag
accgggctttcggcaggccgggtgcagtcggtggctgtgcgcctagtagtggagcgggag
cgggaaatcaaccagttcaaagtatcgtcggcgtaccgcgtaacggcgcgcttcgatgcg
ggcaaaggtgccgtgctggaggccgacctgccaacgcgctacaagactcgtgaagaggct
gaggcgttcttgacccgctgcgtgggcgccgactaccgcattgaaaacctggagaaaaag
ccgggcaagcgcagccccgcgccaccgttcactacctctaccctacagcaggaggcctca
cgcaagctgggcttctcggtagcgcagaccatgagcgtggcccagaagctgtatgaagcc
ggcaaaatctcctatatgcggaccgactcggtgaacctctcacaggatgcactaacggcc
gcccaggaagaaatcagccgtgcctacggccctgaatacgcccaaacccggatttacaaa
accaaatcggcgtcggcgcaggaagcccacgaagccattcggcctaccgactttgcgctg
gtaaaagctggctccgactcgcaggagcagcgcctctacgacctgatccgcaagcgggcc
atggcctcgcagatggcagatgcccagattgagcgtacggtagccaccattggcatcagc
acccagcccggcaccatgctcactgctaccggcgaggttatcacgtttgagggctttctg
aaagcttatgccgagagcaaggacgaagaaacccaggacgatgatgccagccaggaatcg
tcgttctcgcgcgggctgccgccactcacggtgggccagcagctgccgttgcagctgttg
cgggccgtggagcgctatgctgccccagccgcacgctatacagaagcttccttggtgaag
aaactggaggaaatgggcatcggccggccttccacgtacgcacccaccatcagcaccatt
cagaagcggggttatgttgaaaaagatacccgcgaaggcaaggagcggaaatttcatgtc
ctgacgctggacggcagcgaggtgaaaaccgaggtgaaaacggaaacctacggcgccgac
aaagccaagctgttcccgacggatacggccatggtagtcaacgactttctggtggagcac
ttcccggtgattgtggactaccagttcacggcgaaggtggaaggcgaatttgaccggatt
gccgatggcgaggagctgtggaccgacatgctggctggtttctatggcaccttccacgaa
acggtggagcgaggcaaagacattgagcgcaacacgctgggcagcaaccgcgaaattggt
gttcatccggaaactgggcagaagctgacggcccggctcggccgtttcgggccgtatgtg
cagattgaacctaaggaaggcgcacccgaagatgagaaggccgtgtacgcgagcttgcgc
aaaggccagtttatcgagaatatcacgctggaagaggcactggaactgtttaagcttccg
cgcattgtgggtgagtttgaggacaagagcatgacggcggcactaggtcggtttggccca
tacatccgccacgacagcaagttttactcgcttactaaggagcaggacccacataccatt
acggcgcaggaaggaatcgacctgattgaggccaagcgcaaaacggatgcggagcggctt
atcaaggcgtttcctgaccgggaggatgtgcaggtgctcaatgggcggtttggcccctac
atcgtggtgggcaagaaaaacgtgaaaattccgaaaggcgaagagcccgccgacctcacg
ctggagcgttgtctggaactggccgacgctactccggacaagccggccaaaggaggccgt
tttgccaagaaagctccggctgctgaccctaaagacgccgccgacaagccagcgaagaaa
gcggccgctaaaaagccagctgccaagaagccagccgctaaaaaagccgctggcactacc
gcgaagaaagccactgccaaatcgaagtag
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