Hymenobacter sediminicola: H4317_13305
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Entry
H4317_13305 CDS
T09117
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hsk
Hymenobacter sediminicola
Pathway
hsk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H4317_13305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsk03019
]
H4317_13305
03400 DNA repair and recombination proteins [BR:
hsk03400
]
H4317_13305
Enzymes [BR:
hsk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H4317_13305
Messenger RNA biogenesis [BR:
hsk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H4317_13305
DNA repair and recombination proteins [BR:
hsk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
H4317_13305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Ligase_CoA_2
Motif
Other DBs
NCBI-ProteinID:
QNH61142
UniProt:
A0A7G7W449
LinkDB
All DBs
Position
complement(3119071..3120990)
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AA seq
639 aa
AA seq
DB search
MLPETDDILHVLRQTWGHTRFRPLQEDIIRAVLAGQDTLALLPTGGGKSICFQVPALARP
GLCLVVSPLIALMKDQVENLRKRGIKAEAVYAGMSHQEIDQTLDNCVYGPMKFLYVSPER
LLTDMFRARVGKMKVSLLAIDEAHCLSQWGYDFRPPYLRIQELRELLPGVPCIALTATAT
EKVRQDIIDNLRFGASHRVFQQSFARPNLSYSVLSTEDKLKRMLEVVRGVGTDKTSIVYA
RTRRQTEEAANYLHQQNVAAAPYHAGLPSEQRTRTQQDWMQNKTRCIVATNAFGMGIDKP
DVRLVVHLDAPDNLEAYYQEAGRAGRDEKYAFAVLLQGPNDADELRRRTQQAYPPLDTVR
RVYQALANFSRTAVGGGELVAFDFDIQQFAETYRIKALDAHNSLRTLEREGFVQLNEAVN
NPARVHIPIDHTDLYRFQVANQQHDQLIKSLLRFNGGELFAGFQRISENSLAQHLRLSVV
DVRKMLVFLHRSGIIQYQPKHESPQALFTTPRFDADKLPLDQKRLNQARELARHKTESVI
RYAGGGRCRQQLLLEYFSELDASACQVCDFCLARKKARQETAPAPELREQLVALVKASPQ
TPREILTQFAPGQATAVTQLLRELVELGELRYAPDGRLG
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
ttgctgcccgaaaccgacgatattctacacgtgctgcgccagacttgggggcacacccgg
tttcggccgctgcaggaagatattatccgggcggtgctggcagggcaggatacgctggcg
ctgctgccgacgggtggcggtaaaagcatttgctttcaggtgcctgccctggcccggccg
gggctgtgtctggtggtgtcgccgctgattgcgctgatgaaggaccaggtggaaaacctg
cgtaagcgtggcatcaaagccgaagctgtgtatgcgggcatgagccaccaggaaattgac
cagaccctcgacaactgcgtgtatgggccgatgaaattcctgtatgtgagccccgagcgg
ctgctgacggacatgtttcgggcgcgggtgggcaagatgaaggtgagcctgctggccatt
gatgaggcgcattgtctttcacaatggggctacgacttccggccgccctacctacggatt
caggagctgcgcgagttgctgccgggcgtgccgtgcattgctctcacggctactgccacc
gagaaagtgcggcaggatatcatagataatctgcggtttggggcctcgcaccgggtattt
cagcagagctttgcccggcccaatctgtcgtattcggtgctgagcacggaggacaagctc
aagcgcatgctggaagtggtgcgcggggtaggaaccgacaaaaccagcatcgtgtatgcc
cgcacgcgccgccaaaccgaggaggcggccaactacctgcaccagcagaacgtggccgcg
gcgccttaccacgccggcctgcccagcgagcagcgtacccgcactcagcaggactggatg
cagaacaaaactcgttgcatcgtggctaccaatgctttcggcatgggtatcgataagccc
gatgtgcgactggtagtgcacctcgacgcgcccgacaatctggaggcctactaccaggaa
gcgggccgcgccggccgcgacgagaaatacgcctttgccgtgctgctgcagggccccaac
gatgccgacgagctgcgccgccgcactcagcaggcctacccgccgctggatacggtgcgc
cgcgtgtatcaggcgttggccaatttctcgcgcacggccgtgggtggcggcgagttagtg
gccttcgacttcgacattcagcagtttgcggaaacctaccgcatcaaggctctggatgcg
cacaatagcctgcgcacgctggagcgcgagggatttgtgcaactgaatgaagccgtcaac
aacccggcccgcgtccacattcccatcgaccacaccgacctgtaccggtttcaggtggcc
aaccagcagcacgaccagttgattaagagtctgctgcgctttaatggaggagagctgttc
gcaggcttccagcggatttcggagaatagtttagcccagcatttgcgcctgagcgtggtg
gatgtgcgtaagatgctcgtgtttctgcaccgctccggcatcattcagtaccagcccaag
cacgagtcgccgcaggccctgtttactaccccgcgcttcgatgccgacaagctgccgctg
gaccagaaacgcctgaaccaagcccgcgaactggcccgccacaaaaccgaatctgtgatt
cgctacgccggcggtggacgctgccgccagcagctgttgctggagtacttcagcgagttg
gacgcgtccgcctgccaggtctgcgacttttgcctggcccggaagaaagcacgccaggaa
acagcgccggctcctgagttgcgggagcaactggtggctttggtgaaagccagcccgcag
acgccacgcgaaattctgacccagtttgcgcccggccaggctactgccgtcacgcagctg
ctacgggagctggtggagcttggggaactgcgctacgcgccggatgggcggctggggtag
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