Hymenobacter sediminicola: H4317_15915
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Entry
H4317_15915 CDS
T09117
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
hsk
Hymenobacter sediminicola
Pathway
hsk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H4317_15915 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsk03019
]
H4317_15915 (rny)
Messenger RNA biogenesis [BR:
hsk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H4317_15915 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
YtxH
NttC
DUF4954
KH_2
Motif
Other DBs
NCBI-ProteinID:
QNH61629
UniProt:
A0A7G7W5I6
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All DBs
Position
complement(3708734..3710431)
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AA seq
565 aa
AA seq
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MSTSVYIALAAVLALVVGIVVGRLLAGKARQDHEADAKARAQQLLAEAEQQATRTRDERI
QQSKDKFRTLKQEWEQESRRQKQALDQELTERRAAVVEQEQSIKQLTQTTQRQLEQIQRK
ETELDATREKIEAQAQQQREKLEAQEEKRRATLETQLAKLEQREQEVEAELEQRTQELNE
QQQHVQQQLETISGLTAAEAREQLVESLKNEAQIQASSYIKDVVAQSKLTATKDAKKIVL
ETIQRTAAEHAIENCVSVFNIESDDVKGKIIGREGRNIRALEAATGVEIIVDDTPEAIII
SGFDPVRREVARLSLHLLVKDGRIHPARIEEIVAKTRKNIDEEIVEIGEKTIIDLGIHGL
HPELIKMVGRMRFRSSYGQNLLQHSREVANLCATMAAEMGLDVKKAKRAGLLHDIGKVST
EEPELPHAILGMEMAKKYKEHPDVVNAIGAHHDEIEMTAMISPLVQACDAISGSRPGARR
EMMESYIKRLKQLEETANGFKGVNQCFAIQAGRELRVMVDAENVTDERASELSYEISQKI
EKEMQYPGQIKITVIREMRAVAYAK
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgtccacctctgtttatattgctcttgccgccgtgttggcccttgtggtcggcatcgtg
gtggggcgcctgctggccggtaaggcccggcaggaccacgaggccgacgcgaaagcgcgc
gcccaacaactgctggccgaagccgagcagcaagccacccgcacccgcgacgagcggatt
caacaatcgaaagacaagttccgcaccctcaagcaggagtgggagcaggaaagccgccgt
cagaagcaggccctcgaccaagaactgactgagcgccgcgccgccgtagtagagcaggag
cagagcattaagcagctcacccagaccacccagcgccaactggagcagattcagcgcaag
gaaaccgagttggatgccacccgcgaaaaaattgaagcgcaggcccagcagcagcgcgaa
aagctggaagcccaggaagagaagcgtcgcgctactctcgaaacccagctggccaagcta
gagcagcgcgagcaggaagtggaagcggagctggagcagcgtacacaggagctcaacgag
cagcagcagcatgtgcagcagcagctggaaaccatttccggcctcaccgccgccgaagcc
cgcgagcagctggtagagtcgctcaagaacgaggcccagattcaggcctcttcctacatc
aaggacgtggtagcacagtccaagctcaccgctaccaaggacgccaagaaaatcgtgctc
gaaaccattcagcgcaccgctgctgaacatgctattgagaactgcgtgtcggtgttcaac
atcgaatccgacgatgtaaagggcaagattatcggccgcgaggggcgcaacatccgggcg
ctggaagccgctaccggcgtcgaaatcatcgtggacgacacgccggaggctattattatc
tccggcttcgacccggtgcgccgcgaggtggcccgcctgagcttgcacttgctggtgaaa
gacggtcggattcacccggcccgcattgaggagattgtggccaaaacccgcaagaacatt
gatgaggaaatcgtggaaatcggggagaagaccattatcgacctcggcattcacggcctg
caccccgagctgattaagatggtgggacgcatgcgtttccgctccagctacggccagaac
ctgcttcagcactcgcgcgaagtggctaacctgtgcgccaccatggccgccgaaatgggc
ttggatgtgaagaaagccaagcgtgccggcctgctccacgacatcggcaaggtgagcacc
gaggaacccgaactgccccacgccattctgggcatggagatggccaagaagtacaaggag
caccccgacgtggtaaacgccattggcgcccaccacgacgaaatcgaaatgacggccatg
atttcgccgctcgtgcaggcctgcgacgccatcagcggctcgcgccccggtgcccgccgc
gagatgatggaaagctacatcaaacgcctcaagcagttggaagaaaccgccaacggcttc
aagggcgtgaaccagtgcttcgccattcaggccggccgcgagctgcgcgtgatggtagat
gctgagaacgtgacggacgagcgcgcctcggagctgagctacgaaatttcccagaagatt
gagaaggaaatgcagtaccccggccagatcaaaatcacggtcatccgcgaaatgcgcgcc
gtggcctacgctaagtaa
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