Hymenobacter sediminicola: H4317_18465
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Entry
H4317_18465 CDS
T09117
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
hsk
Hymenobacter sediminicola
Pathway
hsk02020
Two-component system
hsk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hsk00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
H4317_18465 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
H4317_18465 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsk03021
]
H4317_18465 (rpoN)
Transcription machinery [BR:
hsk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
H4317_18465 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
HTH_12
SF3b1
LacI
Motif
Other DBs
NCBI-ProteinID:
QNH62103
UniProt:
A0A7G7W6W0
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All DBs
Position
4324487..4326076
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AA seq
529 aa
AA seq
DB search
MQRLDMKQLLSQKLSPQQIQFIKLLQIPTVELEARIKEELEANPALEEGDDADDDFEDQE
GGDDSSDDTDDFDDPDSEFDNPDNTLDEDFDDSRSEEQPEIELPMKDEPADQKESDSADD
LDLSDYLNDDEIAGYKMQGDGPGEDEDDREMPLADTSGSLIDNLLDQLGFADLDEKQEAI
GRQLIGSIDGDGYIRRDLSAIANDMAFAQNVEASVAEVEAVLHVVQSFDPAGIAARDLQE
CLLLQLERRPQDEVTEHAERILNETFDEFTKKHYPRIQQRLDLEDDELKEAIALILKLNP
KPGGTGPVGMGKVQYIIPDFILTNDNGILNLTLNSRNAPDLRVSPAYTDMFRAYDKGAKK
DKKLKEAVTFVKQKLDSAKWFIDAIRQRQNTLLRTMDSIVRYQREFFLDGDESKLRPMIL
KDIATEIGMDISTVSRVANSKSVQTEFGIYPLKYFFSEGIATDSGEDASSREVKHILKEI
IEGEKKDRPLSDDKLEKMLNARGYNIARRTVAKYREQLNIPVARLRKEL
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgactggacatgaaacagcttctctcgcagaagctgtcaccccaacagatacaa
ttcattaagctgctgcaaatcccgaccgtggagctcgaagcccgcattaaggaggagttg
gaggccaatccggcattggaggaaggcgacgacgcggacgacgatttcgaggaccaggaa
ggcggcgacgattccagcgacgacacggatgatttcgacgacccggattcggagttcgac
aatccggacaacactctggacgaggactttgacgacagccgcagcgaggagcagcccgaa
atagagctgccaatgaaggacgagccggcggaccagaaagagtcggacagcgctgatgac
ctggacctgagcgactacctcaacgacgacgaaatagccggctacaagatgcagggcgac
ggccccggcgaggacgaagacgaccgtgaaatgcctttggccgataccagcggctcgctc
atcgataacctgctcgaccagctgggcttcgctgacctagacgagaagcaggaagccatt
ggccgccagctcatcggctcgattgacggcgacggctacatccggcgcgacctgtcggcc
attgccaacgacatggcttttgcgcagaacgtagaagcttcggtggcagaagtagaagcg
gtgctgcacgtggtacagagcttcgacccggccggcatagcggcccgcgacttacaggag
tgcctgctgctacaattggagcgccgcccccaggacgaggtaacggagcacgccgagcgg
attcttaacgaaacattcgacgagtttaccaagaagcactacccccgcatccagcagcgc
cttgaccttgaagacgatgagttgaaagaagccattgccctgattctgaagctcaacccc
aagcccggcggtactggcccggtgggtatgggcaaggtgcagtatatcatccccgacttc
attctgaccaacgacaacggcattctgaacctcacgctcaactcgcgcaacgccccagat
ttgcgtgtgtcgccggcctacacggatatgttccgggcttatgacaagggcgccaagaag
gacaagaagctgaaggaagctgtgaccttcgtgaagcagaagttggactcggctaagtgg
tttattgatgccattcggcagcgccagaacacgctgctgcgcaccatggactccattgtg
cgctaccagcgcgagtttttcctggacggcgacgaaagcaagttgcgccccatgattctc
aaggacatagccaccgaaattggcatggacatcagcaccgtgagccgagtagccaactcc
aaatcggtgcagacggagttcggaatttacccgcttaagtacttcttttccgaaggcatt
gccaccgactcgggcgaggacgccagcagccgcgaggtgaagcacatcctgaaagaaatc
atcgagggcgagaagaaagaccggccactcagcgacgataagctggaaaagatgctgaac
gcccgcggctacaacattgcacgccgcacagtggccaagtaccgcgagcagcttaacatt
ccggtggcgcggctgcgcaaagagctgtag
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