Halobacterium salinarum R1: OE_2981F
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Entry
OE_2981F CDS
T00662
Symbol
rad3a
Name
(GenBank) DNA repair helicase Rad3
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
hsl
Halobacterium salinarum R1
Pathway
hsl03022
Basal transcription factors
hsl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hsl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
OE_2981F (rad3a)
09124 Replication and repair
03420 Nucleotide excision repair
OE_2981F (rad3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsl03021
]
OE_2981F (rad3a)
03036 Chromosome and associated proteins [BR:
hsl03036
]
OE_2981F (rad3a)
03400 DNA repair and recombination proteins [BR:
hsl03400
]
OE_2981F (rad3a)
Enzymes [BR:
hsl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
OE_2981F (rad3a)
Transcription machinery [BR:
hsl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
OE_2981F (rad3a)
Chromosome and associated proteins [BR:
hsl03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
OE_2981F (rad3a)
DNA repair and recombination proteins [BR:
hsl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
OE_2981F (rad3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
PhoH
AAA_22
AAA_11
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CAP13991
UniProt:
B0R5H4
LinkDB
All DBs
Position
1023905..1026307
Genome browser
AA seq
800 aa
AA seq
DB search
MGDADEPWREFFGFEAPYDQQADAIGAAIEAGDSDGFLAMEGPCGTGKTMAALTAGAHLV
RNTDSYERVLVVTPVKQQLEQFVADLRTMNAGLDDPLDGVALVGKRDLCPYEREDKFPDD
AGVHERCEDLRESTAGLVEGDDGGEFDGQDARDLTELPAAETPDEPWWDPAAGRALARSA
RADASQTLSQTPLRTAGTDAPYVPHQPTAPEDMADGDPPLMCPFEADWYGRDKGSPVGFE
TGQHNVVTSADVLPAGVDHGTCPHRVQQVLLDHAEVVVGNYNHLFDPQTRGLTDHLIDDS
TFVVVDEAHRLEERVRDLLSDRLGRHTLTRARNDCRTLLTRANQSRENRQQVTDHLASHD
CSLDAVEAMVGFLDDVLEWLDDRVARYLAAEGFDPDRPGSLPERDHEIPLRDPESEQPDA
LTQWAEQHGHTGDAWRSLAATGTAVQAILDDDGDRSAVAGPVGVTLQRWWERDHATYFRE
VELEHVPKESGRAGAAWAESYTPALVMFNCMPARALRETLSEVGGGVLMSATLEPLDVFR
EVAGLDRLAAGAGDSDPRPVVERRYDLRFPESNRASFLVDATPFTAHNRGDPEPGTDNPT
RDEYRYVLRTVARQPGNVLVCMPNYREAAWAAAYLSDGVVEKDVLVDESSSNAATDDLKA
TFFAGDGKVLVTSTRGTLTEGVDYDGAKLGACLVVGVPLVNVGSPRIRAVRRAYADAFGD
DHAFEYALTVPAVRRARQAIGRVIRGPEEVGVRVFAGGRYVEDARHSVFEYLGPGERAEF
TTLTPSFLGSQLDAFRSESD
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacgccgacgagccgtggcgcgagttcttcgggttcgaggcaccgtacgaccag
caggccgacgccatcggggcggccatcgaagccggtgacagcgacggcttcctcgcgatg
gaggggccttgcgggacgggcaagacgatggcggcgctgaccgcgggcgcgcacctcgtg
cgcaacaccgacagctacgagcgcgtgttggtggtgacgccggtcaaacagcaactggag
cagttcgtcgcggacctccgaacgatgaacgcgggcctcgatgaccccttggacggcgtg
gcgctcgtcggaaagcgggatctctgcccgtacgagcgcgaggacaagttccccgacgac
gccggcgtccacgagcgctgcgaggacctccgggagtcgactgccggcctcgtggagggc
gacgacggcggcgagttcgacgggcaggacgcacgcgacctcaccgaactgccggcggca
gagactcccgacgagccgtggtgggatcccgcagcgggtcgggcgctggcgcggtcggcg
cgcgccgacgccagccagacgctctcgcagaccccgctgcggacggctggcacggacgca
ccgtacgtcccccaccagccgaccgcccccgaggacatggccgacggcgacccgccgctg
atgtgtccgttcgaggccgactggtacggccgcgacaagggctcgccggtcggcttcgag
accggtcagcacaacgtcgtcacgagcgcggacgtgttacccgcaggcgtcgaccacgga
acgtgcccccaccgcgtccagcaggtgctgttggaccacgcggaggtcgtcgtcgggaac
tacaaccacctcttcgacccccagacccgggggctcaccgaccacctcatcgacgactcg
acgttcgtcgtggtcgacgaagcccaccgtctagaggagcgcgttcgagacctgctctcg
gaccgcctggggcggcacacgctcactcgcgcccgcaacgactgccggacgctgctcacg
cgggccaaccagagccgggagaaccgccagcaggtcaccgaccacctcgccagccacgac
tgctcgctcgacgccgtcgaggcgatggtcgggttcctcgacgacgtgctggagtggctc
gacgaccgcgtggcgcgatacctcgccgcggaggggttcgaccccgaccgcccggggtcg
ctgcccgaacgcgaccacgagatcccgctgcgggaccccgaaagcgagcagcccgacgcg
ctcacgcagtgggccgaacagcacggccacaccggggacgcgtggcggtcgctggcggca
accggcaccgcggtgcaggcgatcctcgacgacgacggcgaccgatcggcggtggcgggc
cccgtgggcgtcacgctccagcggtggtgggaacgcgaccacgcgacgtacttccgggag
gtggagctagagcacgtgcccaaggagtcggggcgggccggcgcggcgtgggccgaatcc
tacacccccgcgctcgtgatgttcaactgcatgcccgcccgcgcgctccgggagacgctg
tcggaggtcggcggcggcgtgttgatgagcgccaccctggaaccgctggacgtgttccgg
gaggtcgccggcctggaccgcctggcggcgggcgcgggcgacagcgacccccgccccgtc
gtggagcgccgctacgatctgcggttccccgaatcgaaccgcgcgagcttcctcgtcgac
gccacgccgttcacggcgcacaaccgcggcgaccccgagccgggcaccgacaacccgacg
cgcgacgaataccgctacgtgctgcggacggtcgcccgccagcccggcaacgttctcgtc
tgcatgccgaactaccgggaggcggcgtgggcggccgcctatctcagcgacggcgtcgtc
gagaaggacgtgctcgtcgacgaatcgtcgtcgaacgccgcgactgacgacctcaaagcg
acgtttttcgctggcgacggcaaggtgctggtgacgagcacacggggcacgctcaccgag
ggcgtcgactacgacggcgcgaaactcggggcgtgtctcgtcgtcggcgtgccactggtg
aacgtcgggtcgccacggattcgggcggtcaggcgcgcgtacgccgacgccttcggcgac
gaccacgccttcgagtacgccctgacggtgcccgcggttcggcgcgccagacaagccatc
gggcgcgtgatccgcggccccgaggaggtcggggtgcgcgtgttcgccggcggccggtac
gtcgaggacgcacgccactccgtcttcgagtatctcggcccgggtgagcgcgccgagttc
acgacgctcacgccgtcgttcctcgggagccagctggacgcgttccgctcggagtcggac
tga
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