Halobacterium salinarum R1: OE_3010F
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Entry
OE_3010F CDS
T00662
Symbol
rad25c
Name
(GenBank) DNA repair helicase Rad25
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
hsl
Halobacterium salinarum R1
Pathway
hsl03022
Basal transcription factors
hsl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hsl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
OE_3010F (rad25c)
09124 Replication and repair
03420 Nucleotide excision repair
OE_3010F (rad25c)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsl03021
]
OE_3010F (rad25c)
03400 DNA repair and recombination proteins [BR:
hsl03400
]
OE_3010F (rad25c)
Enzymes [BR:
hsl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OE_3010F (rad25c)
Transcription machinery [BR:
hsl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
OE_3010F (rad25c)
DNA repair and recombination proteins [BR:
hsl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
OE_3010F (rad25c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
ERCC3_RAD25_C
Helicase_C
DEAD
SNF2-rel_dom
AAA_22
AAA_30
MarR_2
HTH_20
DUF6886
AAA
AAA_33
AAA_5
AAA_25
Motif
Other DBs
NCBI-ProteinID:
CAP14009
UniProt:
B0R5J2
LinkDB
All DBs
Position
1036871..1038673
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AA seq
600 aa
AA seq
DB search
MTDISKDRFLDALEGVGRPVATAEQIARELDCTQATAADALAALAADDEVERANVEPDPV
VWYPRDWLELTDRERIVPFPDRREIIVDQPSQLTRAQLSRVAHLTDTTRTGSYRYEVRAE
DVWAAPFDSLSDLVAAITELLPRDCPTLIEWVREQWTRATRFRLRTHDDGYVVLEAATDS
LLGNVAEQKLDDDVLRAPISDTEAWVAAEQVAPLKRTLYEAGYPVRDDRDLESGEPLAVD
LHLDLRPYQQDWVDRFEDASAGVLVGPPGSGKTVAAMGALESVGGETLVLVPSRELATQW
REELLANTSLTGDQIGEYHGGEKRVRPVTIATYQTAGMDRHRHVFDDREWGLIVYDEVHH
IPAEVARRSASLQSKHRLGLTATPVREDDKEADIYTLVGRPIGTDWDALFDAGFVAEPEV
EIRYVPWRDDDDRYEYAAASGHTRRRLAAENPAKEAEIEHLVDQHGDTQALVFVDYLSQG
ERIAERLDAPFVNGETPHSRRETHFDQFRTGALDALVVSRIGDEGIDLPDAEFAVVASGL
GGSRRQGAQRAGRTMRPGSQSLLFVLATRGTEEEDHARSRMRHLSTKGVRVTESDASHSP
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
gtgactgacatctccaaggaccggttcctcgacgcgctggagggcgtcggccggccggtg
gcgacggccgaacagatcgcgcgcgaactcgactgcacgcaggccacggccgccgacgcc
ctggccgcactcgccgcggacgacgaggtcgaacgtgcgaacgtcgaacccgaccccgtg
gtgtggtatccacgggactggctggagctcaccgaccgggagcgcatcgtgccgttcccg
gaccgccgcgagatcatcgtcgatcagcccagccagctcacgcgcgcccagctctcgcgg
gtcgcacacctcacggacaccacccgaacggggagctaccgctacgaggtgcgcgccgaa
gacgtgtgggccgcccccttcgacagcctctcagacctcgtggcagccatcacggaactg
ctgccccgggactgcccgacgctcatcgagtgggtgcgcgagcagtggacgcgcgccacc
cggttccggctgcgcacccacgacgacggctacgtcgtcctggaagccgccaccgacagc
ctcctggggaacgtcgccgagcagaaactcgacgacgacgtgctccgcgccccgatctcg
gacacggaggcgtgggtcgccgccgagcaggtcgcgcccctcaagcgcacgctctacgag
gccggctatcccgtccgcgacgaccgcgacctcgaatccggggagccactggccgtcgac
ctccacctcgacctgcggccgtaccagcaggactgggtcgaccgcttcgaggacgccagc
gccggcgtgctcgtcgggccgcccggctcgggcaaaacggtcgccgccatgggcgcgctc
gaatccgtcggcggcgaaacgctcgtgctcgttcccagccgcgaactcgccacgcagtgg
cgcgaggagctgctggcgaacaccagcctgaccggcgaccagatcggcgaataccacggc
ggcgagaaacgcgtccgcccggtcaccatcgcaacctaccagaccgccggaatggaccgc
caccgccacgtcttcgacgaccgcgagtgggggctcatcgtctacgacgaagtccatcac
atccccgccgaggtcgcgcgccggtcggccagcctccagagcaaacaccgcctcgggctg
accgcgacgccggtccgggaggacgacaaggaggccgacatctacacgctcgttggtcgc
cccatcggcaccgactgggacgccctcttcgacgccggcttcgtcgccgagcccgaagtc
gaaatccggtacgtgccgtggcgcgacgacgacgaccgctacgagtacgccgccgccagc
ggccacacccgccgccggctcgccgccgagaaccccgccaaggaagccgagatcgagcac
ctcgtcgaccagcacggcgacacccaggcgttggtgttcgtcgactacctgagccagggc
gagcgcatcgccgagcgcctcgacgccccgttcgtgaacggcgaaaccccacacagcagg
cgcgaaacccacttcgatcagttccgcacgggcgcactggacgccctcgtggtgtcccgc
atcggcgacgagggcatcgacctgcccgacgccgagttcgcggtcgtggcctccgggctc
ggcgggagccgccggcagggcgcacagcgcgccggccgcaccatgcgccccggcagccag
tcgctgctgttcgtgctggcgacccgcggcaccgaggaggaagaccacgcccgcagccgg
atgcgacacctctccacgaagggcgtccgcgtgaccgaatccgacgccagccactcgccg
tga
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