Halobacterium salinarum R1: OE_3112R
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Entry
OE_3112R CDS
T00662
Symbol
cdc48b
Name
(GenBank) AAA-type ATPase (CDC48 subfamily)
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hsl
Halobacterium salinarum R1
Pathway
hsl04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hsl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
OE_3112R (cdc48b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsl03019
]
OE_3112R (cdc48b)
03009 Ribosome biogenesis [BR:
hsl03009
]
OE_3112R (cdc48b)
04131 Membrane trafficking [BR:
hsl04131
]
OE_3112R (cdc48b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hsl04147
]
OE_3112R (cdc48b)
Messenger RNA biogenesis [BR:
hsl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
OE_3112R (cdc48b)
Ribosome biogenesis [BR:
hsl03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
OE_3112R (cdc48b)
Membrane trafficking [BR:
hsl04131
]
SNARE
SNARE associated proteins
Others
OE_3112R (cdc48b)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
OE_3112R (cdc48b)
Exosome [BR:
hsl04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
OE_3112R (cdc48b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
AAA_2
AAA_5
TIP49
AAA_22
AAA_33
nSTAND3
RNA_helicase
AAA_14
NPHP3_N
AAA_7
AAA_28
IstB_IS21
DUF815
Mg_chelatase
AAA_18
ABC_tran
AAA_3
NB-ARC
TsaE
Parvo_NS1
AAA_17
Sigma54_activat
SLFN-g3_helicase
AAA_24
AAA_11
PhoH
AAA_30
AAA_19
ATPase
NACHT
AAA_lid_PRS2_C
AAA_25
bpMoxR
Zeta_toxin
ATP-synt_ab
NTPase_1
Bac_DnaA
Motif
Other DBs
NCBI-ProteinID:
CAP14060
UniProt:
B0R5P3
LinkDB
All DBs
Position
complement(1085670..1087949)
Genome browser
AA seq
759 aa
AA seq
DB search
MKLTVKPLKQKDAGRGLAAVDRDSMDELALENGDYVVIDGQGDHGRAVARVWPGYPEDDG
DGVVRIDGRLRKEADVGIDDQVTVEPADIKPAGGVTVALPQNLRVRGNIAPMVRDRLNGR
PVTAGQTIPISFGFGGMSTISGQQIPVKIAETEPSGTVVVSNDTEIQLSERPAEEIAPGA
GEAAETGDPTPNVTYEDIGGLDGELEQVREMIELPMRHPELFQQLGIDPPKGVLLHGPPG
TGKTLIAKAVANEIDAHFETISGPEIMSKYYGESEEKLREVFDEAEENAPAIVFVDELDS
IAPKRGETQGDVERRVVAQLLSLMDGLEDRGDVTVIAATNRVDAIDPALRRGGRFDREIE
IGVPDQDGRKEILQVHTRGMPLVEDIDLDDYAESTHGFVGADIESLAKEAAMNALRRVRP
DIDLESDEIDAELLESISITEADFKRALNGIEPSALREVFVEVPDTTWADVGGLTDTKER
LRETIQWPLDYPDVFSEMDLQSAKGVLLYGPPGTGKTLLAKAVANEANSNFISVKGPELL
NKYVGESEKGVREVFEKARSNAPTVVFFDEIDAIAGQRGRATSDSGVGERVVSQLLTELD
GIEALEDVVVVATSNRPDLIDDALLRPGRLDRHIHVPVPDADARRAILDVHTRDKPLADD
VDLDVVAQRMDGFVGADVEALVREATMNATREFINSVDPADASDSVGNVRVTMAHFEAAL
GEVTASVDADVKENYEEIEQRFNTADTPTDDEPASGAFR
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcacggtcaaaccactcaaacagaaggacgcaggtcgcggtctcgccgccgtc
gaccgcgactccatggacgagctggcgctcgaaaacggcgactacgtggttatcgacggg
cagggcgaccacgggcgcgcggtcgcccgcgtctggccgggctaccccgaagacgacggc
gacggcgtcgtccgcatcgacggacggctgcgcaaggaggccgacgtcgggatcgacgat
caagtcaccgtcgaacccgcggacatcaagcccgccggcggcgtcaccgttgccctcccg
cagaaccttcgcgtgcgcggcaacatcgcgccgatggttcgtgaccggctcaacggccgc
ccggtcaccgccgggcaaaccatccccatctcgttcgggttcggcggcatgagcaccatc
tccggccaacagatcccggtcaagatcgccgaaaccgagcccagcggcacggtcgtcgtc
agcaacgacaccgaaatccagctctccgagcgccccgccgaagagatcgcgccgggggcc
ggtgaggcagccgagaccggcgaccccacgccgaacgtcacctacgaggacatcggcggc
ctcgacggcgaactcgaacaggtgcgggagatgatcgagttgccgatgcgtcaccccgaa
ctcttccagcaactcggcatcgacccgccgaaaggcgtgctcctccacggcccgcccggc
accggcaaaacgctcatcgcgaaagccgtcgccaacgagatcgacgcgcacttcgagacg
atctccggcccggagatcatgagcaaatactacggcgaaagcgaggagaagctccgcgag
gtcttcgacgaggccgaggagaacgcccccgcgatcgtcttcgtcgacgagctcgactcc
atcgcgcccaagcgaggcgaaacccagggcgacgtcgagcgccgcgtggtcgcccagctg
ttgagcctcatggacggcctggaggaccgcggcgacgtcacggtcatcgcggcgaccaac
cgcgtcgacgccatcgaccccgcgctccgccggggcgggcgtttcgaccgcgagatcgag
atcggcgtccccgaccaggacggccgcaaggagatcctgcaggtgcacacgcgtggcatg
ccgctggtcgaggacatcgacctcgacgactacgccgagagcacgcacggcttcgtcggc
gcggacatcgagagcctcgccaaggaagccgcgatgaacgcactgcgccgggtgcgcccg
gacatcgacctggaatccgacgagatcgacgccgaactcctggaatccatctcgatcacg
gaagccgacttcaagcgcgcgctgaacggcatcgagccgtccgcgctccgcgaagtgttc
gtggaggtgccggacaccacgtgggcggacgtcggcggcctcacggacaccaaagaacgc
ctccgggagaccatccagtggcccctggactacccggacgtgttctccgagatggatctc
cagtccgccaaaggcgtcttgctgtacggcccgccgggcaccggcaagacgctgttggcg
aaagccgtcgccaacgaggcgaactcaaatttcatctccgtgaaaggcccggagctgctg
aacaagtacgtcggcgagtccgagaagggcgtccgtgaggtgttcgagaaggcgcggtcg
aacgccccgacagtggtgttcttcgacgagatcgacgccatcgcgggccagcgcgggcgc
gcaaccagcgactcgggcgtgggcgagcgcgtcgtctcccagctgctcaccgaactggac
ggcatcgaggccctcgaagacgtggtcgtggttgcgacctcgaaccggccggacctcatc
gacgacgcgctgctgcggccgggccgcctcgaccgccacatccacgtgccggtgcccgac
gccgacgcgcgccgcgcgatcctcgacgtgcacacgcgcgacaaacccctcgcggacgac
gtcgatctcgacgtcgtggcccagcggatggacgggttcgtcggcgcggacgtggaggcg
ctcgtccgggaggccacgatgaacgccacccgcgagttcatcaactccgtcgaccccgcc
gacgccagcgactccgtggggaacgtccgcgtaacgatggcgcacttcgaggccgcgctc
ggggaggtcacggccagcgtcgacgcggacgtcaaggagaactacgaggagatcgaacag
cggttcaacaccgcggacacgccgaccgacgacgaacccgcgtccggagcgttccgctga
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integrated database retrieval system
