Halobacterium salinarum R1: OE_3973F
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Entry
OE_3973F CDS
T00662
Symbol
arf1
Name
(GenBank) peptide chain release factor aRF-1
KO
K03265
peptide chain release factor subunit 1
Organism
hsl
Halobacterium salinarum R1
Pathway
hsl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
OE_3973F (arf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsl03019
]
OE_3973F (arf1)
03012 Translation factors [BR:
hsl03012
]
OE_3973F (arf1)
Messenger RNA biogenesis [BR:
hsl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
OE_3973F (arf1)
Translation factors [BR:
hsl03012
]
Eukaryotic type
Release factors
OE_3973F (arf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eRF1_2
eRF1_3
eRF1_1
baeRF_family10
acVLRF1
DUF7562
Zn_ribbon_8
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
CAP14567
UniProt:
B0R748
Structure
PDB
PDBj
LinkDB
All DBs
Position
1556373..1557623
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AA seq
416 aa
AA seq
DB search
MSEQDEVPSEDRRKYEFRKVIEELKDYEGSGTQLVTIYIPPDKQISDVVAHVTQEHSEAS
NIKSKQTRTNVQDALTSIKDRLRYYDTFPPDNGMVVFSGAVDSGGGRTDMVTEVLESPPQ
PIESFRYHCDSAFLTEPLAEMLGDKGLYGLIVLDRRESNVGWLKGKRVQPVKSAESLVPG
KQRKGGQSAQRFARLRLEAIDNFYQEVAGMADDLFVPKRHEIDGILVGGPSPTKDEFLDG
DYLHHELQDKVLGKFDVSYTDESGLSDLVDAGQAALAEADLMDDKSDMEEFFEELNGGKL
ATYGFEQTRRNLIMGSVDRLLVSEDLREDVVIYECPNDHEEYETIDRRNTSPEHTCSDCG
EEATEVDREDAIDHLMSIADQRGTETHFISTDFEKGEQLLTAFGGYAGILRYSTGV
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagcaggacgaggtaccgtccgaggaccgacgcaagtacgagttccgcaaggtc
atcgaggagctcaaagactacgagggcagcggcacccaactggtcaccatctacatcccc
ccggacaagcagatctcggacgtcgtggcccacgtcacccaggagcactccgaggcctcc
aacatcaaatccaagcagacacgcaccaacgtccaggacgccctcacgtcgatcaaagac
cgactgcgctactacgacacgttccccccggacaacgggatggtcgtgttctcgggcgcg
gtcgactccggcggcggccgcacggacatggtcacggaagtcctggagtcgccaccccag
cccatcgagtcgttccgctaccactgcgactcggcgttcctcaccgaacccctcgcggag
atgctcggcgacaagggcctctacgggctgatcgtcctcgatcgccgcgagtcgaacgtc
ggctggctgaagggcaagcgggtccaaccggtgaaatccgcggagtccctggtgcccgga
aaacagcgcaagggcggccagtccgcccagcggttcgcccggctgcgcctggaagccatc
gacaacttctaccaggaggtcgcgggcatggccgacgacctcttcgtgccgaagcgccac
gagatcgacggcatcctcgtgggcggcccgtcaccaacgaaagacgagttcctcgacggg
gattacctccaccacgagctccaggacaaggtcctggggaaattcgacgtgtcgtacacc
gacgagtccgggctgtcggatctggtcgacgcggggcaggcggcgctggcggaagccgac
ctgatggacgacaaatccgacatggaggagttcttcgaggagctcaacggcggcaagctc
gccacctacgggttcgagcagacgcgccgaaacctcatcatgggctcggtcgaccgcctg
ctggtctccgaggacctccgcgaggacgtcgtcatctacgagtgccccaacgaccacgag
gagtacgaaaccatcgaccgccggaacaccagccccgagcacacgtgttcggactgcggc
gaggaggccaccgaggtcgaccgcgaggacgccatcgaccacctcatgtcgatcgccgac
cagcgcggcacggagacgcatttcatctccacggacttcgagaagggcgagcaattgctg
accgcgttcggcgggtacgccgggattttgcggtactcgaccggcgtgtag
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