Halobacterium salinarum R1: OE_4102R
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Entry
OE_4102R CDS
T00662
Symbol
endA
Name
(GenBank) tRNA-splicing endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
hsl
Halobacterium salinarum R1
Brite
KEGG Orthology (KO) [BR:
hsl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hsl03016
]
OE_4102R (endA)
Enzymes [BR:
hsl01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
OE_4102R (endA)
Transfer RNA biogenesis [BR:
hsl03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
OE_4102R (endA)
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GFIT
Motif
Pfam:
tRNA_int_endo_N
tRNA_int_endo
Motif
Other DBs
NCBI-ProteinID:
CAP14639
UniProt:
B0R7C0
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All DBs
Position
complement(1627647..1628678)
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AA seq
343 aa
AA seq
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MDGDLRGDTVHIGGDARQRFHDARGYGYPLGGNDIAVSLVEAAHLLFRGDLDSVDGMGFR
AFLTDREAGFAARFLVYVDLRDRGFYLVPDRDPWWRDPGDGDFVVFPRGNTRRDGVVKHR
VRVVDERTTLPVDGLSESVLAVVDEESEITYLDIAPETPTGETTLDRPTDVPGVLLDDRV
LVWEPPQRLHNAGFYGQPLGGRAADHDALQLSLVEAAYLIDAGVLRLTDATIDDVRARGR
LGEGEHFDCRLAVYRALRDAGAVPKTGFKFGADFRVYSAVSSVDDLGHSELLVRVITDTH
VFSPGDLSLDVRLAHGVRKRMVFAATDDTDDTIRWLSVSRLTP
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atggacggcgatctgcgcggggatacagtgcatatcggtggcgacgcccgccagcgattc
cacgacgcacgcgggtacggctacccgctgggcggcaacgacatcgcggtgtcgctcgtg
gaggccgcccacctcctgttccgtggcgacctcgattccgtcgacggcatggggtttcgg
gcgtttctcacggaccgcgaggcggggttcgccgcccggtttctggtctacgtcgacctc
cgggatcgggggttctacctggtgccggaccgcgacccgtggtggcgcgaccccggcgac
ggcgatttcgtggtgttcccgcgcgggaacacgcgccgcgacggcgtcgtgaaacaccgg
gtgcgcgtggtcgacgagcgcacgaccctccccgtcgacgggctctcggagtcggtgctg
gcggtcgtcgacgaggaaagcgagatcacctacctcgacatcgcccccgaaacccccacc
ggggagacgacgcttgaccgccccaccgatgtcccgggggtgttgttggacgaccgcgtg
ctcgtctgggagcccccacagcgcctgcacaacgccggcttctacggccagcccctcggc
gggcgcgccgccgaccacgacgccctccagttgtcgctcgtggaggcggcgtacctcatc
gacgccggcgtgttgaggctcaccgacgccaccatcgacgacgttcgtgcccgcgggcgg
ctcggtgagggcgagcatttcgactgccggctggccgtctatcgcgcgctccgtgacgcc
ggcgcggtcccgaaaaccggattcaagttcggcgccgacttccgcgtgtactcggcggtg
tcgtcggtcgacgacctcgggcactcggagctgctggtgcgcgtgatcaccgacacccac
gtgttctccccgggggacctctcgctcgacgtgcgactggcccacggcgtccgcaagcga
atggtttttgcggctaccgacgacacagacgacacgattcgctggctttcggtgagtcga
ttgacgccatga
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