Halobacterium salinarum R1: OE_4282F
Help
Entry
OE_4282F CDS
T00662
Symbol
recJ1
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ1
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hsl
Halobacterium salinarum R1
Pathway
hsl03410
Base excision repair
hsl03430
Mismatch repair
hsl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hsl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
OE_4282F (recJ1)
03430 Mismatch repair
OE_4282F (recJ1)
03440 Homologous recombination
OE_4282F (recJ1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsl03400
]
OE_4282F (recJ1)
DNA repair and recombination proteins [BR:
hsl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
OE_4282F (recJ1)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
OE_4282F (recJ1)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OE_4282F (recJ1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
Motif
Other DBs
NCBI-ProteinID:
CAP14744
UniProt:
B0R7M5
LinkDB
All DBs
Position
1727680..1729107
Genome browser
AA seq
475 aa
AA seq
DB search
MDTDGPPVPALAERAAACADALRDADSVLVASHIDADGLTSAGIASTALERAAIPHEVVF
SKQLDDEEIADIAGANHGTVLFTDFGSGQLDAITAHERAGEFTPVIADHHQPAENAATDY
HLNPLLEGVDGGTELSGAGATYVLARALLGTDATDLAALAVVGAVGDRQTVDGELVGANT
RVAADGVEAGVLDTATGLALYGTQTRPLPRLLEYASELYIPGITNDHQGAIRFLDALDVD
LHDGGDWRTWASLDHDERRTVVSALVKRAVRTGVPSAEVTTLVGTTYTLTDEEPGTALRD
ASEFATLLNATARYERADVGLAVCMGDRGDALERARSLREEHRQTLSEGVSWVTREGVTV
EDDLQWFHADDRIRETIVGIVAGMALSGDETENDRPIVAFAAKDDEPAVKVSARATARVV
DAGVDLAVVVREAAAAAGGDGGGHEAAAGATVPAGNERAFLDAASGVLAAQRGGD
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgacggcccccccgtgccggcgctggccgagcgcgcagcggcctgcgcggac
gccctgcgggacgccgacagcgtcctcgtggcgtcgcacatcgacgccgacggcctgacg
agcgcgggcatcgcgtcgacagccctggagcgtgcggccatcccccacgaggtcgtgttc
tcgaagcaactcgacgacgaggaaatcgccgacatcgcgggtgctaaccacggaacggtg
ctgttcaccgacttcggcagcgggcaactggacgcgatcaccgcccacgagcgggcgggc
gagttcacgccggtgatcgccgaccaccaccagcccgctgagaacgccgccaccgactac
cacctcaacccgctgctggagggcgtcgacggcggcaccgagctgtccggtgcgggcgcg
acctacgtgctcgcgcgggcgctgctcggaacggacgccacggatctggcggcgctggct
gtcgtcggcgcggtcggcgaccgccaaaccgtcgacggcgaactcgtcggcgcgaacacc
cgcgtcgcggccgacggcgtcgaggcgggcgtgctggacaccgccaccgggctcgcgctg
tacggcacgcagacgcggccgctgccgaggctcctggagtacgcaagcgagctgtacatc
ccgggcatcacgaacgaccaccagggcgcgatccggttcctcgacgccctcgatgtcgac
ctccacgacggcggcgactggcggacgtgggcgtcactggaccacgacgagcgccgaacc
gtcgtcagcgcgctcgtcaagcgcgccgtccggaccggcgttcccagcgcggaagtgacg
accctcgtgggcacgacgtacacgctcaccgacgaggagcccggcaccgcgctgcgggac
gcaagcgagttcgccacgctgctgaacgcgacggcgcgctacgagcgcgccgacgtcggg
ctcgcggtctgcatgggggaccgcggtgacgcgcttgagcgcgcgcggtcgctccgcgag
gaacaccggcaaacgctctccgagggcgtgtcgtgggtgacacgggagggcgtcaccgtc
gaggacgacctccagtggttccacgccgacgaccgcatccgggagaccatcgtgggcatc
gtcgctgggatggcgctgagcggcgacgaaaccgagaacgaccgccccatcgtcgcgttc
gcggccaaggacgacgagcccgcggtgaaggtgtcggcgcgcgccaccgccagggtcgtc
gacgccggcgtggatctcgcggtggtcgtccgagaggccgcggctgcggccggcggcgac
gggggcggccacgaggccgccgcgggtgcaaccgtgccggcgggcaacgagcgggcgttc
ctggacgccgccagcggcgtgctcgccgcccagcgcggcggcgactag
DBGET
integrated database retrieval system
