Halobacterium salinarum R1: OE_4424R
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Entry
OE_4424R CDS
T00662
Symbol
rad3b
Name
(GenBank) DNA repair helicase Rad3
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
hsl
Halobacterium salinarum R1
Pathway
hsl03022
Basal transcription factors
hsl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hsl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
OE_4424R (rad3b)
09124 Replication and repair
03420 Nucleotide excision repair
OE_4424R (rad3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsl03021
]
OE_4424R (rad3b)
03036 Chromosome and associated proteins [BR:
hsl03036
]
OE_4424R (rad3b)
03400 DNA repair and recombination proteins [BR:
hsl03400
]
OE_4424R (rad3b)
Enzymes [BR:
hsl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
OE_4424R (rad3b)
Transcription machinery [BR:
hsl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
OE_4424R (rad3b)
Chromosome and associated proteins [BR:
hsl03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
OE_4424R (rad3b)
DNA repair and recombination proteins [BR:
hsl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
OE_4424R (rad3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
Zot
SLFN-g3_helicase
AAA_22
AAA_34
ATPase
PhoH
Mg_chelatase
ArsA_ATPase
YdfZ
nSTAND3
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
CAP14828
UniProt:
B0R7V9
LinkDB
All DBs
Position
complement(1819564..1821795)
Genome browser
AA seq
743 aa
AA seq
DB search
MAARRDDTPDYMQFFPKPSPYDNQRAAMDAIRDALDGGTNVLFEGACGTGKTLAALAPAL
SHAQAEDKTVVITTNVHQQMRQFVREAREIHATEPIRAVVFKGKGSMCHIDVDYEECQVL
RDNTHELVDATRDKRQLEERQRALLDEAQDGDTEAADARQAVMDELEAVESELAALQDGN
VCERYRQNLVGNTDEFYQWLYDDVRTPEDIYGYAEEAGFCGYELLKDGIEGVDLAVCNYH
HLLDPGIRAQFFRWLGRDPEDVVVVFDEAHNIEDAARDHAAETLTEQTLDSALDELQDTS
DQRAAAAERVLGAFRDALVETYEDALRPGGDGPADTKSAVESNWVDVPVANDDRRDDLTL
AFLQSYTGPGITEDVTDALGLGEYLDGEYEDAYRNGDATTRRECHVLAAAEFVEAYVERG
GEFGQYPTAAVRRDDRTEAVYGRAERYTCIPREVTTDLFDAVHASVLMSATLRPFDVIGD
VLGLDDPVELAFGLQFPEDRRRTFAVDTEPLFSSNREDRATQQAVAGALRDAAAYTPGNC
LFFFPSYAEAKRYHDLLADCDATRYLDEPGVAADDLREAFVADGDGALFTSLWGTLAEGV
SFDGDDARTVAVVGVPYPHLDARTEAVQDAYAQAFADRDADQGLRSDRQDAGWRYAVEIP
TVRKTRQAMGRVIRSPEDFGVRMLVDRRYTAASRTGMQKYSVNPTFPPSERAEMVDVDPE
KLRFSLLNFYGDLGAYGGDPPAP
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
gtggccgcacgcagagacgacacccccgactacatgcagttcttcccgaagccgtcgccg
tacgacaaccagcgggccgcgatggacgcgatccgggacgcactcgacggcggcaccaac
gtgttgttcgagggggcgtgcggaacgggcaaaacccttgccgcgctcgcgccggcgctg
tcgcacgcccaggccgaggacaaaacggtcgtcatcacgaccaacgtccaccagcagatg
cgccagttcgtgcgcgaggcccgcgagatacacgccaccgaacccatccgcgcggtcgtg
ttcaagggcaaggggtcgatgtgtcacatcgacgtggactacgaggagtgccaggtgctg
cgggacaacacccacgagctcgtggacgccacccgggacaaacgccagctcgaagaacgc
cagcgcgctctgctcgacgaggcacaggacggcgacaccgaggccgccgacgcccggcag
gccgtcatggacgagctggaagccgtcgagtcggagttggcggccctccaggacggcaac
gtctgcgagcgctaccgccagaacctcgtggggaacaccgacgagttctaccagtggctg
tacgacgacgtccgcaccccggaggacatctacggctacgccgaggaggcggggttctgc
gggtacgaactcctcaaggacggcatcgagggcgtggatctggcggtctgcaactaccac
cacctgctggacccggggattcgggcgcagttcttccgctggttgggccgggaccccgag
gacgtggtggtggtgttcgacgaggcgcacaacatcgaggacgccgcccgcgaccacgcc
gccgagacgctcaccgagcagaccctcgacagcgccctggacgagctccaggacacgagc
gatcagcgggcagcggccgccgagcgcgtgctcggggcgttccgggatgcgctcgtcgag
acctacgaggacgcgctgcgtccgggcggcgatggaccggcggacacgaagtcggcggtg
gagtcgaactgggtggacgtgccggtcgccaacgacgaccgccgggacgacctgacgctg
gcgttcctccagtcgtacaccggcccggggatcaccgaggacgtcaccgacgccctgggg
ttgggggagtacctggacggggagtacgaggacgcgtatcggaacggcgacgcgacgacc
cgccgggagtgccacgtgctggccgccgccgagttcgtagaggcgtacgtcgagcgcggc
ggcgagttcgggcagtatccgacggcggcggtgcgccgcgacgaccgcaccgaggcggtg
tacgggcgggccgagcgctacacctgcatcccgcgggaggtgaccaccgacctgttcgac
gccgtgcacgcaagcgtcctgatgagtgcgacgctgcggcccttcgacgtgatcggcgac
gtgttggggttggacgaccccgttgagttggcgttcgggctgcagttcccggaggaccgc
cgccggacgttcgccgtcgacaccgagccgttgttctcctcgaaccgcgaggaccgcgcg
acccagcaggcggtcgcgggcgcgctccgggacgccgcggcgtacacgccgggcaactgt
ctgtttttcttcccgagttacgccgaggcgaagcgctaccacgacctgctggcggactgc
gacgccacgcggtatctggacgaaccgggggtggcggctgacgacctccgggaggcgttc
gtcgccgacggggacggcgcgctgttcacgtcgctgtgggggaccctggccgagggcgtg
agcttcgacggcgacgacgcgcggacggtcgcggtcgtcggcgtcccgtacccgcatctg
gacgcgcggaccgaggccgtccaggacgcgtacgcccaggcgttcgcggaccgcgatgcc
gaccagggacttcgcagcgaccgccaggacgccggctggcggtacgcggtggagatcccg
accgtgcggaagacccgccaggcgatggggcgcgtgattcggtcgccggaggacttcggc
gtgcggatgttggtcgatcggcggtacacggcggcgagccgcaccgggatgcagaagtat
tcggtgaacccgacgttcccgccgagcgagcgcgcggagatggtggacgtcgatccggag
aagctgcggttctcgttgttgaacttctacggcgatctgggggcgtacggtggcgatccg
ccggctccgtag
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