Halobacterium salinarum R1: OE_5328R
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Entry
OE_5328R CDS
T00662
Name
(GenBank) UvrD/REP family helicase
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
hsl
Halobacterium salinarum R1
Brite
KEGG Orthology (KO) [BR:
hsl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsl03400
]
OE_5328R
Enzymes [BR:
hsl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OE_5328R
DNA repair and recombination proteins [BR:
hsl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
OE_5328R
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
CAP15640
UniProt:
B0RA36
LinkDB
All DBs
Position
PHS3:complement(203712..207347)
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AA seq
1211 aa
AA seq
DB search
MTEDPEEIQLTEEQEDALVQGRNVAITAGAGTGKTTTLTERYVTILAENPSLTPENIITI
TFTRKAAAELTERVREEVYDRLEAVDSPEAYNRWRNVLDDLEDGYVHTIHAFCARLLRER
AVEAPVPLGFDVLDEDGAATLQREVVTEFLERNQDDDDVALLAQLWGRDQLVDVLAGLLD
ERPQSESVLEAWRDADVDDYVDICWEVVCDLDVADARQTLYADGLLEQLRTVAGRVDREG
AIADEDGLRAYRTLTKVATTLPDDPQESDPRDCQRAILELYEACEKKNGGLYSSSGYVVG
DRDDWGEHGDVYDDLKDTIDAVIAAVEPHADAVETTPGELEANSAHYALALMRAFDDVLA
AYTAEKDRRDTLDFPDVIETTLEFLRANDAVTERLREQFAAVMVDEFQDTDPRQWELVKL
LTGVDEGTASNVFLVGDEKQSIYGFRGADVTTFGNARRELQTVNEARGVDDVPDGEAESP
TALELSGNFRTLDEPLSFLNELFEYLLQPEGDTHEPYEAPPQELTTQRDRIEDIEGLTGS
VEYLAVPDDADTAAELFGDDHPVAEGALDHTIEAEAQALAARLTHLFDDPPQVQDPDTGV
HREATPDDTAILLRRRTHLDRYQRALEEYDIPYTVVGGVGFYDTPEVQALTNLLRVLGDP
EDDVSLYGVLRSPLFGFADDRLAPAVAEADSVWDALAETDDPQLADAFDLLSTWRTLSGC
AAPSENGVLPWNRLLSRVIDDTGYLASVSADERGRQAIANVEKFRDQVRTWSENGVHTAA
GLLHRIDRQAEIDPREGEADIPGDAEGVRIMTIHSAKGLEFPIVTVPDLGSDLNFGRSVD
DHGYVRLVDGTDDAPPVPAVGGPDPGDAFSIEKTAVHEYADRQSRPQERAESKRLLYVAC
TRTRDHLLLCGTHDIDVDESGAIELGEPAAFDDADRWRDWVQPALLDGALVAEAIRDGQA
RGEMDEASYTVRRPPRPVDWHTDDDAVDPALEISIPSPPSLAPAKRIAATTLVNAVADAS
TDGHSYSQREESAGLSPTTFGTVVHRINELRPPRDEWSTLIHRLSRMTGEVPTEADVREA
VDHAADAVEFVDHIESGSQLQEVHDEYSVVARIDESRIAGYIDRLLVMPDAFHIIDYKTN
DLSATTSDELADHYRPQMLAYALALLQHDQTRDVRASLRFTDEGVEERFNWDSEQMTEIE
SELRSMVDLVD
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgactgaggaccccgaagagattcagctcacggaggaacaggaggacgcgctcgtccag
ggccggaacgtcgcgatcactgccggtgctgggacggggaagacgacaacgctcaccgag
cgctacgtgacgatcctggccgaaaacccgtcgctcacgcccgaaaacatcatcacgatc
accttcacgcgaaaggcggctgccgaactgaccgagcgcgttcgggaggaggtgtacgat
cggctcgaggctgtcgactcaccagaggcctacaaccgctggcgtaacgtccttgacgac
ctggaggacggttacgtccacaccattcacgcgttctgtgcccggctcttgcgagaacga
gccgtcgaggctccggtgccgctcggcttcgacgtgctcgacgaagacggcgctgcgaca
ctccagcgcgaagtcgtgacggagttcctcgaacgcaatcaggacgatgacgatgttgcg
ctccttgcccagctctggggtcgcgaccagttggtcgatgtactcgctggattactcgat
gagcgcccccagagcgagtccgtcctcgaggcgtggcgtgacgccgatgtcgacgactac
gtcgatatctgctgggaggtcgtctgcgatctcgacgttgccgacgctcgacagacgctg
tatgcggacggactccttgaacagctacgcacggttgcgggccgcgtcgaccgcgagggc
gctatcgccgacgaggacggccttcgggcctaccggaccctcaccaaggtcgcgacgaca
ctccctgacgacccccaggaaagcgacccccgcgactgtcagcgggcaatcctcgagctg
tacgaggcctgtgagaagaagaacggcggcctgtacagcagttcggggtacgtcgtcggt
gaccgggacgactggggtgagcacggtgatgtctacgacgatctaaaggacaccatcgac
gcggtcatcgcggccgtcgaaccacacgcggatgcagtcgagacgacgccgggggaactg
gaagcgaatagcgcccactacgcgctcgccctgatgcgagccttcgacgatgtcctcgca
gcctacactgccgagaaggaccgccgcgacacgctcgactttcctgacgtgatcgagacg
acgctcgagttcttgcgagctaacgatgccgtcacggagcggctacgagagcagtttgcg
gccgtgatggtcgatgagttccaggacacggacccgcgccagtgggagttagtcaaactc
ctcacgggcgtcgacgaggggacggcgtcgaacgtcttcctggtcggcgacgagaaacag
agcatctacggattccgtggcgccgacgtgacgacgtttgggaatgcgcgcagagaactc
cagaccgtcaacgaagcccgcggtgtcgacgacgtccccgacggcgaggccgagagtccg
accgcactcgaactctccgggaacttccggacactggacgagccgctatcgttcctgaac
gagctcttcgagtacctgctccagccggaaggggatacgcacgaaccatacgaagcacca
ccgcaggagttgaccacgcagcgtgaccgtatcgaggacatcgagggactgactgggagc
gtcgagtatctcgctgttcccgacgacgctgacacggcggcagagctcttcggcgacgac
cacccggtcgccgaaggcgcgctcgaccacaccatcgaggccgaggcacaagcgctcgct
gctcgactgacccacctgttcgacgatccgccgcaagtccaagaccccgacacgggtgtt
catcgtgaggccaccccggacgacacggcaatcttgctccgccggcgaacccatcttgac
cggtatcagcgcgcccttgaggagtacgacattccctacactgtcgtcggtggcgtcggg
ttctacgatacgcctgaggtccaggcgctcacgaacttgcttcgagtactcggtgacccg
gaggatgacgtctccctctatggggtgcttcggtcaccgctgttcggattcgcggatgat
cgcctcgcaccggcggtcgcagaggccgattcagtgtgggatgcgctcgccgagacggac
gatccacagctcgcggacgcgttcgacctcctttcgacgtggcgcaccctcagtggctgt
gcggccccgtccgaaaacggtgtcctcccgtggaatcgcctgctgtcccgagtgatcgac
gataccgggtatctggcgagcgtgagtgctgacgaacgcggtcgacaggccatcgcgaac
gtcgagaagttccgtgaccaggtccgcacctggagtgagaacggggttcatactgctgcg
gggttgctccaccggatcgaccgccaagccgagatcgacccccgtgagggggaggcagat
attccgggtgacgccgagggcgttcggattatgacgatccattcagcgaagggactcgag
ttcccgatcgtcaccgtccccgatctcgggagtgacctcaacttcggtcgctccgtggac
gaccacgggtacgttcgactcgtggacggaactgatgatgcccccccggtgccagcggtc
ggtggaccggatccgggcgatgcgttctcgatcgagaagaccgccgtccacgagtacgct
gaccgacagtcccgtccacaggagcgggcggagtcgaagcggctcctctacgttgcgtgt
acacgaacacgggatcacctccttctctgcggcacacacgatatcgatgtcgacgagtcc
ggtgcaatcgaactgggggaacctgctgccttcgacgatgcagaccggtggcgcgactgg
gtacagccagctctcctcgatggagcactcgtcgccgaggcgattcgggatggacaggcc
cgtggcgagatggatgaggccagttataccgttcgcaggccgccgcgccctgttgattgg
cacaccgacgacgacgctgttgatccagcactggagatatcgattccgtcaccgccgtcg
ctagcgccggcgaaacggatcgcggccacgacgctcgtgaatgcggtggcagacgcgtct
acagacggtcacagttactctcagcgtgaggagtcggcgggcctgagccctacgacgttc
gggacggtcgtccaccggatcaacgaactccgaccgccgagagatgaatggtccaccctg
atccaccgtttgagtcggatgaccggtgaggtgccgacagaagcagacgtccgtgaagct
gtcgaccacgctgctgatgcagtcgaatttgtggaccacatcgaatccggttcccagctt
caggaagttcacgacgagtactccgttgtcgcccgaatcgatgagtcgcggattgccggt
tatatcgaccgcctgctcgttatgccggatgcctttcacattatcgactacaagaccaac
gatctctcggctacaacctcggatgagcttgcggatcactatcgaccgcagatgctcgcg
tacgctctcgcactcctccaacacgaccagactcgtgacgtacgagcctcactccggttc
actgacgaaggggtagaggaacggttcaattgggactcggagcagatgacggaaatcgaa
tctgaactacgatcgatggtggatctggtagattaa
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