Halobacterium salinarum R1: OE_5335R
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Entry
OE_5335R CDS
T00662
Name
(GenBank) homolog to nuclease subunit B
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
hsl
Halobacterium salinarum R1
Brite
KEGG Orthology (KO) [BR:
hsl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsl03400
]
OE_5335R
Enzymes [BR:
hsl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OE_5335R
DNA repair and recombination proteins [BR:
hsl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
OE_5335R
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
CAP15641
UniProt:
B0RA37
LinkDB
All DBs
Position
PHS3:complement(207340..210528)
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AA seq
1062 aa
AA seq
DB search
MNNTLLTGSQHSRLEQVAFERADQMADDSLGSVLYITRNDARRSMVEDSWAASHDPLRLR
VETLDAVVRQWHEDLQGPVQPLSGQLNRRLAEYALDGMTAKTDGALAGEPASAALADSFS
SRFSLFDDAGVGTADALAAEFEGSALDDRIATPTVDAYRHYRDLHGDYVDEWVCTRGEMF
DAVATAEQSLSVLSPELDVVVLSGYHEFRPVERRLIERIVDELSMIALLPLHQDGRSGVD
TVAEDALEVYEALDFEKVELEPANESGRAFGTITESLYRPDPDTAPVPDGLRWRELPTPE
REIRFVARELRTELANGRDPDDLAVVAPGTEAYSGYVEDTFDTFDIPHVTTAASQLNQTF
AGSVVHDLLNLAEPDPRAEDLTSLLANPLVDIVDTDQANAVTAAARRRDTVSVSPLLDDV
DDEVASLVEELLATLEPLRTDDIEDATETLRRLMDDRFDLEAATEDYASGAEQAVEQRAY
DLVDEVLSSFESLAAVNSDLSPLALFTRAFDGVAIRVPQRAAGGHVEVMGLLDARMRSFE
KVFLVGLTSEHFPVTPERPAFFEEMTDADPRFDTGDERLRGRYLFATLLANVDELTITTP
ETGDDESAVVRSPVLDELQRVTGIEPEDGVDDRVGSREDLQRRVAATADRRAAVSHAGDR
GDLSPEQTKRTDRGLHCADNRGTAGLSEHDGVLEPETVDEVYPPSEREPYSASRIERYVE
CGFKFYADEVLGIEDPDDIEVVPTPLETGSYVHDVLERFFADLQDETEDGVDLTEFDRHD
LATHLREIAVEELQDTDFEYDGLFYERWKAELFAGLGDGESVPYEAGSKPHDAPEQGLFA
TFLDNELSRDSAGRPHLFEAPFGEGLPDSDAGPFTVERPDGSTVSIRGYIDRVDVSRDGE
QPTLTLYDYKTGRAPYMTKTTGGTKFQLPIYLLAAAEVVDGDLFEQGSLSATYYQLRPPN
DLKVPRGLESKFDSEVDLRRFLNNVVPEWLGQIDEAIGKGRFHTTVLSARGANCRYCDYR
RACDVRHHRKREFVDEVHEDDAAYVPIRVRDDEDIETVMNDD
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atgaataatacgcttttaactggttcccaacattcacgtttggaacaagttgcttttgaa
cgggcggaccagatggctgatgattctcttggctctgtcctatatataacgcggaacgac
gctcgccggagtatggtcgaggacagctgggccgcgtcgcacgacccactccgtcttcgt
gttgagacgctcgatgcggtcgttcgacagtggcacgaagatctccagggcccggtccaa
cccctctccggacagttgaatcgccggctcgcggagtacgcgcttgacggaatgacagcc
aaaacagatggcgctctcgccggcgaacctgcctcggctgctctcgcggattcgtttagt
agtcgcttctcactcttcgatgacgccggcgttgggactgccgacgcgctcgcagcggaa
ttcgaaggctccgctcttgatgaccgtattgcgacacccactgtcgacgcgtaccgacac
taccgggacctccacggcgactacgtcgacgagtgggtctgtacccggggagagatgttc
gacgccgtggcgacggcggagcagtcactctcggtcctctctccggaactggatgtcgtc
gtcctctcggggtatcacgagttccgtcccgtcgaacgccgcctcatcgaacgcatcgtc
gacgaactttcgatgatcgcgttgctgccgctccaccaggatgggcgaagcggagtcgac
actgttgcggaggacgccttggaggtctacgaagcactcgactttgagaaagtagaactc
gagcccgccaacgagtccgggcgggccttcggtacgatcactgagtcactctaccgcccg
gatcctgacaccgcccctgttccggacggcctccggtggcgggaactcccgacgcccgaa
cgcgagattcgcttcgtcgctcgcgagctccggactgagttggctaatggtcgcgatccc
gacgacctggctgtcgtcgccccagggacggaggcctattcggggtacgtcgaggacacg
ttcgacacgttcgacattccccacgtcacgacagccgcatcacagctgaaccagacgttt
gcagggagcgtcgttcatgatctgctgaacctggccgaacctgacccgcgtgctgaagat
ctcacatccttgttggcgaatccgctggtcgacatcgtcgacaccgaccaggccaacgcc
gtcacggcagctgctcgccggcgcgacaccgtttctgtgtcgcccctgctcgacgacgtc
gacgacgaggtcgcgtcactggtcgaagagctgctggccacgctggagcccctccgaacg
gacgacatcgaggacgcaaccgagacgctccgacggctgatggacgaccgcttcgacttg
gaggcggcgacagaggactacgccagcggcgccgagcaagccgtcgaacagcgggcctac
gacctcgtggacgaggtgctgtcctcgttcgagtcgctggcggcggtcaatagcgatctt
tccccgttggcactgttcacccgtgcgttcgacggtgtggcgatccgggttccgcagcgc
gccgccggtggtcacgtcgaagtgatggggttgctcgacgcccggatgcgttcgttcgag
aaggtgttcctcgtgggcctgacgagcgagcacttcccggtgacgccggagcgaccggcc
ttcttcgaggagatgaccgacgccgatccgcgcttcgacactggcgacgagcgcctccgt
ggccgctatctcttcgcgacgctcctcgcgaacgtcgacgagctcacgatcaccacaccg
gagacaggcgacgacgaatccgccgtcgtccggtcaccggtccttgacgaactccagcgc
gtgaccggtatcgaacccgaggatggcgtcgacgaccgcgtgggctcccgcgaagacctc
cagcggcgcgtcgctgcaacggccgaccggcgtgcggcagtcagccacgccggcgaccga
ggtgacctctcccccgagcagaccaagcgcacggatcgaggactccactgtgcggacaac
aggggaacggctggcctctccgaacacgatggcgtgttagaacccgagacagtcgatgag
gtatacccgccgtcggagcgggaaccctacagcgcgagtcgaattgagcgatacgtcgag
tgtgggttcaagttctacgctgacgaagtactcggaatcgaggaccccgacgatatcgag
gtcgtccctacgcctctcgaaactggatcgtacgtccacgacgtcctcgaacggttcttc
gcggatctacaagacgaaaccgaagacggtgtcgatctcaccgagttcgatcggcacgac
ctagcgacgcaccttcgcgagattgccgtcgaagaactccaagacactgacttcgagtac
gacgggctgttctacgagcggtggaaggcggagctgttcgcaggtctcggtgacggcgag
agcgtcccgtacgaggctggaagcaaacctcacgacgcaccggaacaggggttgttcgcc
accttcctcgacaacgaactctcccgagacagcgccggccgcccacacctattcgaggcc
ccgttcggcgaggggcttcccgactcggatgctgggccgttcacggttgagcgaccggac
ggctcgactgtctcgattcgtgggtacatcgaccgcgttgacgtgagccgggacggtgag
caaccgacgctcacgctgtacgactacaagactggtcgagcaccgtatatgacgaagacg
accggcggcacgaagttccagctccccatctatctactcgctgctgccgaggtcgtcgac
ggtgacctattcgagcagggctcgctctcagcgacgtactaccaactgcgaccacccaac
gacctcaaggttccacgcgggctcgaatcgaagttcgattcagaggtcgaccttcgtcgc
ttcctgaacaacgttgttccggagtggctgggccaaattgacgaagcgatcggcaaggga
cggttccatacgacggtcctgtcggcccgtggtgcgaactgccgatactgtgactaccga
cgggcgtgcgatgtccgccaccaccgcaagcgggagttcgtcgacgaggttcacgaggac
gacgctgcgtacgttccgatccgtgttcgcgacgacgaggacatcgagacggtgatgaac
gatgactga
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