Histophilus somni 2336: HSM_0527
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Entry
HSM_0527 CDS
T00673
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hsm
Histophilus somni 2336
Pathway
hsm03410
Base excision repair
hsm03430
Mismatch repair
hsm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HSM_0527
03430 Mismatch repair
HSM_0527
03440 Homologous recombination
HSM_0527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsm03400
]
HSM_0527
DNA repair and recombination proteins [BR:
hsm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HSM_0527
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HSM_0527
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HSM_0527
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ACA32177
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Position
604464..606185
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AA seq
573 aa
AA seq
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MNKFIKRRDVAIDVQVCEHPLLDRIYRARQIKNPQQLDRTLKSMLAPDLLHGIGSAVDLL
VTAREKQQKIVIVGDFDVDGATSTALIVLALRQLGFTDVDYLVPNRFEQGYGLSVEVAKL
ALEKNVELLITVDNGVSSFDGVVFLKNAGVQVLITDHHLPPEILPPAHAIVNPNLTQCNF
PSKFLAGVGVAFYVMLALRAKLRDLGIFTTQTQPNFTELLDLVALGTISDVVPLDQNNRI
LAYQGLARIRAERCRPGIRALAEIANRNMSRLTASDLGFSIGPRLNAAGRLDNMSVGVEL
LLTDDMQHARQLAFELDSLNQARKEIEQGMKQEALEICRNLTALSKQLPLGIVLYQVDWH
QGVLGILASRIKDKFHRPTIAFAQDQVGILKGSARSIEGLHMRDVLERIHSRYPDMILKF
GGHAMAAGLSIREELFTQFQQAFIQTVTEWLKEEQLQGIIWTDGQLAPAFLNLETAELLR
QAGPWGQGFPEPCFDGEFTILRQSIVGEKHLKMLVEPKQGGPLLDAIAFNIDKDYYPDFS
IKHARIAYKLDSNEFRGNRHVQLLVDYIEPLDH
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
gtgaataagtttattaaacgacgtgatgttgcgatagatgttcaagtttgtgaacatcct
ttattggaccgaatttaccgtgcacgtcaaattaaaaatcctcaacaattagaccgcact
ttgaaatctatgttggcacctgatttgctacatggtattggaagtgcggtggatttattg
gtaacagcgagagaaaaacaacaaaagattgttattgtcggtgattttgatgttgacgga
gcaaccagcacagcacttattgttttggctctgcgtcaacttgggttcacagatgtagat
tatttagtacctaatcgctttgagcaaggttacggtttaagcgtggaagtagctaaatta
gcattagaaaaaaatgttgagttattgattacagtagataatggggtatcttcttttgat
ggtgttgtgtttttaaaaaatgcgggagtgcaagtgttgattacagatcaccacttaccg
ccggaaatattgcctcctgcccatgctattgttaatccaaatcttacacaatgtaatttt
ccttcaaaatttcttgctggtgtcggtgtcgctttttatgtcatgctggcattgcgtgca
aaattacgtgatttagggatttttactacgcaaacccaaccgaattttacagagttatta
gatttagttgcccttggtacaatttccgatgtagtaccgcttgatcaaaataatcgtatt
ttagcttatcaaggtttagccagaattcgagctgagcgttgtcgtcccggtattcgtgct
ttggcggaaattgcaaatcgtaatatgagtcgattgaccgcttccgatttaggcttttct
attggtccaagattgaatgctgccgggcgtttggacaatatgtctgttggtgtggagtta
ttattgaccgatgatatgcaacatgctcgtcaattagcttttgaattagatagtttgaat
caggctcgtaaagaaattgagcaaggtatgaaacaggaagcgttagaaatttgtcggaat
ttgaccgcactttctaagcaattaccgctgggcatcgtactatatcaggttgattggcat
caaggtgtactcggtattttggcttctcgaattaaagataaatttcatcgaccgaccatt
gcgtttgctcaggatcaagtcggaattttaaaaggttcagcacgatctattgaaggttta
catatgcgtgatgtgttagagcgtattcattctcgctatccggatatgattttaaaattt
ggtggtcatgcgatggctgcagggttgagtattcgtgaggaattgtttacacaatttcaa
caagcctttattcaaactgtgactgaatggttaaaagaagaacaattacaaggtattatt
tggactgatggtcaattagcaccagcgtttttaaatttggaaacagcggaattactgcgt
caagccggtccttgggggcaaggttttccggagccgtgttttgatggtgaatttacaatt
ttacgccagagtattgtgggtgaaaaacatttaaaaatgcttgttgagcctaaacaagga
ggtccgctgttggatgctattgcatttaatattgataaggattactaccctgatttttcg
ataaaacatgcaagaatagcttataaattagatagtaatgagtttcgtggaaatcgtcat
gttcagttgttggtagattatattgaacctttagatcattaa
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