Histophilus somni 2336: HSM_0843
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Entry
HSM_0843 CDS
T00673
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hsm
Histophilus somni 2336
Pathway
hsm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hsm00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HSM_0843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsm03021
]
HSM_0843
Transcription machinery [BR:
hsm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HSM_0843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GBP_C
Put_DNA-bind_N
Motif
Other DBs
NCBI-ProteinID:
ACA32516
LinkDB
All DBs
Position
967428..969293
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AA seq
621 aa
AA seq
DB search
MEQNKQSQLKLLIARGKEQGYLTYAEVNDHLPEDLVDADQIEDVIQMINDMGIQVLESVP
DADDLMLNENITDEDAVEEATQVLSSVEAELGRTTDPVRMYMREMGSVELLTREGEIDIA
KRIEEGINEVQSAVAAYPKALNYLLEQYTLVEEGGMRLADLITGFVDPNAVVEEEIIEAD
DILTEDDEEHVESNVDVNDEEEEEDSEDNSNVDSDSDNTIAPEVAREKFEALRIQHQKTL
AAIEKYGRSRKQAKDHIQALADIFTQFRLVPKQFDALVNYMRDMMKSVRQHERQIQKLVV
DLAKMPKENFQKLFIGNESSEGWLDKLLLARKPWSERLIQHESAVRQSINQLLKIEQETN
LTISQIREICDKVAQGELKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL
MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ
KMGREATSEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDNTLELPL
DSATAQSLRAATHEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEA
KALRKLRHPSRSETLRSFLDE
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggaacaaaataaacaatctcagctgaaattgttaattgcacgaggtaaagaacaaggt
tatttaacttatgccgaagtgaatgatcatcttcctgaagatcttgttgatgctgatcaa
attgaagatgtgattcaaatgatcaatgatatgggtattcaagtacttgaaagtgtgcct
gatgctgatgacttgatgctcaatgaaaatattacggatgaggatgctgttgaggaagcg
actcaagtattatcaagtgtagaggcagagttgggaagaacaacagatcctgtgcgtatg
tatatgcgtgaaatgggaagtgttgaacttcttacgcgtgaaggcgaaatcgatattgca
aaacgcatcgaagaagggattaatgaagtacaaagtgccgtagccgcttatcctaaagca
ctcaattatcttcttgaacagtatactttagttgaagaaggcggtatgcggttggctgat
ctcattaccggttttgttgatccaaatgcggttgttgaagaagagataattgaagccgac
gacatacttacagaagatgatgaagaacatgtagaaagcaatgttgatgtaaacgatgaa
gaagaggaagaggatagcgaagataatagcaatgtagactctgattcggataacacaatt
gccccagaagttgctcgtgagaaatttgaagcactaagaatacaacaccaaaaaacttta
gccgcaatagaaaaatatggtcgttcccgtaaacaagcaaaagatcatattcaagcatta
gccgatatttttactcagttccgtttagtgcctaaacagttcgatgcgttggtcaattat
atgcgtgatatgatgaaatctgttcgtcagcatgaacgacaaattcaaaagctggtagtt
gatttggctaaaatgccaaaagaaaatttccaaaaattatttattggcaatgaaagttca
gagggttggctggataaattactgcttgcaagaaaaccttggtctgaaagattaatacaa
catgaaagtgcggttcgtcaaagcataaaccaattattaaaaattgaacaggaaaccaat
ttaactatttctcaaattcgtgaaatttgtgacaaagtggcacaaggagaattaaaagct
cgccgtgcaaaaaaagaaatggttgaagcaaatttacgtttggttatttcaattgcgaag
aaatacactaaccgtggattgcaattccttgatctcattcaagaagggaatattggttta
atgaaagcggtagataaatttgaataccggcggggttataaattttcaacctatgcaact
tggtggatacgtcaagcgattacacgctctattgcagatcaagcaagaacgatccgcatt
ccagtgcatatgattgaaactatcaataaattaaaccgcatttctcgtcaaatgttacaa
aaaatggggcgtgaagccacatctgaagaattagctgaacgaatgggaatgcctgaggat
aaaattcgtaaagtattaaaaatcgcaaaagagcctatctctatggaaacgcctatcggt
gatgacgatgattcccatttaggtgattttattgaagacaatacgttagagctaccgtta
gattctgcgacagcccaaagtttgcgtgctgcaacgcatgaagtgttggaaggactaacc
ccaagagaagcaaaagtcttgcgtatgcgttttggtattgatatgaatacagatcatacc
ttggaagaagtcgggaaacaatttgatgtaactcgtgaacgtattcgtcaaattgaagct
aaagcattgcgtaaattgcgtcatccaagtcgttctgaaaccctacgcagtttcttagat
gagtaa
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