Histophilus somni 2336: HSM_1001
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Entry
HSM_1001 CDS
T00673
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
hsm
Histophilus somni 2336
Brite
KEGG Orthology (KO) [BR:
hsm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hsm03016
]
HSM_1001
Enzymes [BR:
hsm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HSM_1001
Transfer RNA biogenesis [BR:
hsm03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HSM_1001
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
DUF2274
Motif
Other DBs
NCBI-ProteinID:
ACA30711
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All DBs
Position
complement(1139764..1141743)
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AA seq
659 aa
AA seq
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MFQNNPLLSQLKQQIRDSKPHVEGIVRGSDKAFGFLECDKKSYFIPPMAMKKVMHGDKIK
AVIETIGDKEQAEPEELIDPMLTRFIAKVRFNKDKKLQLVVDHPQINQPIGATQTKAVKE
ELQEGDWVVAQLKNHPLRDDRFFFAHISEFICHADDELAPWWVTLAYHEQSRYPVQGQES
YPLLDQQEREDLTALHFITIDSETTKDIDDALYIEPISENEAQVGWKLVVAIADPTAYID
INSQIEQDAKQRCFTNYLPGFNIPMLPRELSDDLCSLSENAQRAALVCYITTDLQGEITA
TPYFVSAYVMSKAKLAYDKVSDYLEQKTGCWQPQDPVTQQQIAWLHEFTLARSQWRKTHA
LLFKEKPDYSFVLAENGKVQEIKTEYRRIANQIVEEAMIIANICAAQYLDEKIGFGIFNT
HSGFDKKFLENAHHFLLSNLTNEQNQAELKQRYSVENLATLSGYCNMRHDIGASENNYLE
LRLRRFLTSAEFKTELAPHFGLGLQGYATWTSPIRKYSDIVNHRLIKASLTTQQYERPQD
SVLQRLQEARRQNRLVERDIADWLYCRYLADKVEQKQIFQAEIQDVMRGGLRVLLLENGA
SVFIPASTLHSNREELQVNAEEIALYIKGEKTYKIGDIIHVQLVDVKEETRSIIGNIAN
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaaaataatcccctactttcccaactcaaacaacaaattcgtgatagtaaaccg
catgtagaaggtattgtaagaggttctgacaaagccttcggtttccttgagtgtgataaa
aaaagttattttattccgccaatggcaatgaaaaaagttatgcatggcgacaaaattaaa
gcagtgattgaaacgattggcgataaagaacaagctgaaccggaagaactcattgacccc
atgctaactcgctttattgccaaagtgcggttcaataaagacaagaaattacaacttgta
gtcgatcacccccaaattaatcagccaattggagcgacacaaacaaaagccgttaaagaa
gaattacaagagggagattgggttgtggcacagctaaaaaaccatcctttacgtgatgat
cgttttttctttgcacacatttctgaatttatttgtcacgctgatgacgaacttgcacct
tggtgggtaactttggcatatcatgaacaatctcgttatcccgtgcaagggcaagaaagt
taccctctattggatcaacaagaacgtgaagatctcaccgcacttcacttcatcactatt
gatagtgaaacaacaaaagatatagatgatgctttatatattgagccaattagcgaaaat
gaagctcaagtcggttggaaattagtcgttgcgattgccgatccaacagcttatattgat
attaattcacaaattgaacaagatgctaaacaacgttgtttcactaattacttgccggga
tttaatattccaatgttgcctcgagagttatccgacgatctttgctctctttccgaaaat
gctcaacgtgccgcattggtttgttatatcacaacagatttacaaggtgaaattaccgcc
acaccatactttgtctctgcttatgtaatgtcgaaagctaaactagcttatgataaagtg
tctgattatttagaacaaaaaacaggttgttggcaaccacaagatcctgttactcaacaa
caaattgcgtggttacatgagtttaccttagccagatcacaatggcgtaaaactcatgct
ttactgtttaaagaaaaaccggactactcttttgtactggcagaaaatggtaaagtacaa
gagattaaaacggaatatcgtcgcattgcaaaccaaattgttgaagaagcaatgattatt
gcgaatatttgtgcggcacaatatctggatgaaaaaattggttttgggatttttaatact
catagtggtttcgataaaaaattcttggaaaatgcacatcatttcctgctgtcaaattta
accaacgaacaaaatcaagcagaattgaaacaacgctattctgtagaaaatttagcaact
ttaagtggatactgcaatatgcgtcatgatattggagcaagcgaaaataattatcttgaa
ttgcgtttacgtcgtttcttaacctctgcagaatttaaaacggaattagcaccgcacttt
ggcttaggtttgcaaggttacgccacatggacatctccaattcgtaaatattcggatata
gttaatcatcgcctaattaaagcaagtctcacaacacaacaatatgaacgccctcaagat
agtgtcttacaacgtttacaagaggctcgtcgtcaaaaccgtttagttgagcgagatatt
gcagattggttatattgtcgctatttagcagataaagtagaacaaaaacaaatatttcaa
gcagaaatacaagatgtcatgcgtggcggattacgtgtacttctattggaaaatggtgct
tccgtctttattccggcatcaaccttacacagcaatagagaagaacttcaggtcaatgcc
gaggaaattgcactttatattaaaggagaaaaaacatacaaaattggcgatataattcat
gttcaacttgtagacgttaaagaagaaacgagaagcattattggaaatattgctaactaa
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