Histophilus somni 2336: HSM_1202
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Entry
HSM_1202 CDS
T00673
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
hsm
Histophilus somni 2336
Pathway
hsm00061
Fatty acid biosynthesis
hsm00071
Fatty acid degradation
hsm01100
Metabolic pathways
hsm01212
Fatty acid metabolism
hsm02024
Quorum sensing
hsm04146
Peroxisome
Module
hsm_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
hsm00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
HSM_1202
00071 Fatty acid degradation
HSM_1202
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
HSM_1202
09145 Cellular community - prokaryotes
02024 Quorum sensing
HSM_1202
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
hsm01004
]
HSM_1202
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hsm04147
]
HSM_1202
Enzymes [BR:
hsm01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
HSM_1202
Lipid biosynthesis proteins [BR:
hsm01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
HSM_1202
Exosome [BR:
hsm04147
]
Exosomal proteins
Exosomal proteins of breast milk
HSM_1202
Exosomal proteins of breast cancer cells
HSM_1202
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_2
Motif
Other DBs
NCBI-ProteinID:
ACA30926
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All DBs
Position
1359081..1360763
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AA seq
560 aa
AA seq
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MQKPWFQNYPEGSPLELDTSKYESLLDMFDKAIREHPDRPAYVNMGQVLTFRKLEERSRA
FAAYLQNELKLKRGERVALMMPNLLQYPIALFGTLRAGLVVVNVNPLYTPRELEHQLQDS
GATAIVVVSNFASTLEKVVFNTNIKHVILTRMGDQLSFGKRTLVNFVVKYIKKLVPKYKL
PSAVTFREVLAVGKNRQYVRPQVERTDLAFLQYTGGTTGVAKGAMLTHGNIITNIFQAAW
IASPFVGDHKKQRKAIIALPLYHIFALTANCLLFIELGITAVLITNPRDIDGFIKELKKH
RFVGITGVNTLFNALLNNENFKEVDFSALKLSVGGGMAIQQSVATRWHELTGCNIIEGYG
MTECSPLIAACPINVVKHNGTIGVPVPNTDIKIVKDDGSLAELDEPGELWVKGEQVMQGY
WQRPEATEEVLKDGWLATGDIVIMDKTYSLRIVDRKKDIIIVSGFNVYPNEIEDVVMLNP
KVAEVVAIGIPDEVSGEKIKIFVVKKDDSLTRDEIRQHCRQYLTGYKIPKYIEFRDELPK
SNVGKILRRVLRDEELAKHA
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaccttggtttcaaaattaccctgagggctcaccgctggaactggacacttca
aaatatgaaagtttgttagacatgtttgataaagctattcgtgagcatcctgatcgtccg
gcttatgtaaatatggggcaggttttaactttccgtaaattagaagaacgtagtcgagct
tttgctgcttatttacaaaatgaactaaaattaaagcgaggtgagcgtgttgctttaatg
atgccgaatttattgcaatatccaattgcattattcgggactttgcgtgcaggtttggtt
gtggtcaatgttaatccactttatacaccgagagaactggagcatcaattacaggatagc
ggtgcaacagcaattgttgtggtatcaaattttgcgtcaactttagaaaaagtcgttttt
aatacgaatatcaagcacgtcatcctcactagaatgggggatcagctctcttttggtaaa
cgtactttggtcaattttgtagtgaaatatattaagaaattggtgccaaaatataagtta
ccgagtgcggtaacatttcgtgaagttttggctgtcggtaaaaaccgtcaatatgtacgt
ccacaagtggaacgcactgacttagcctttttacaatatacaggtggcacaacaggtgtg
gcaaaaggtgcaatgttgacacatggaaatattattacaaatatttttcaagcggcttgg
attgcctcaccctttgtaggcgatcataaaaaacagcgtaaagccattatagctttaccg
ctttatcatatatttgcattaacagcaaactgtttactttttattgaattaggtattacc
gcagttttaattactaatcctcgtgatattgacggtttcattaaagaattaaaaaaacat
cgttttgtagggataactggggtgaatactttatttaatgccttgctgaataacgaaaac
tttaaagaggttgatttttccgcattgaagttgtctgtgggaggcggtatggctatccaa
caatctgtagcgactcgttggcatgaattgactggttgcaatattattgaaggctatgga
atgacagaatgttcgcctttaattgcagcatgcccaatcaatgtagttaaacataatgga
actattggtgttccagtaccgaatacagatattaaaattgtcaaagatgacggttcttta
gctgaacttgatgaacctggagaactttgggttaaaggtgagcaggtaatgcaagggtat
tggcaacgtccagaggcaacggaagaagtgttaaaagacggctggctggcaacgggtgat
atcgttattatggataaaacttatagtttacgcatagtagatcgtaaaaaagacattatt
attgtatctggttttaatgtttatccgaatgagattgaagatgttgtaatgcttaatcct
aaagtagcggaagttgttgctattggtattccggatgaagtttcaggtgaaaaaatcaaa
atttttgttgtgaaaaaagatgatagtttaactcgtgatgaaatacgccagcattgtcgt
caatatcttacagggtacaaaattccgaaatatattgagtttcgtgatgaattaccgaaa
agtaatgtaggtaaaattttgcgtcgagtattacgtgatgaagagctggcaaaacatgcg
taa
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