Histophilus somni 2336: HSM_1978
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Entry
HSM_1978 CDS
T00673
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
hsm
Histophilus somni 2336
Pathway
hsm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hsm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HSM_1978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsm03021
]
HSM_1978
03400 DNA repair and recombination proteins [BR:
hsm03400
]
HSM_1978
Enzymes [BR:
hsm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HSM_1978
Transcription machinery [BR:
hsm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HSM_1978
DNA repair and recombination proteins [BR:
hsm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HSM_1978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
HHH_XRCC3_RpoA
BetaGal_dom3
Motif
Other DBs
NCBI-ProteinID:
ACA31774
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All DBs
Position
2225390..2226379
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AA seq
329 aa
AA seq
DB search
MQGSVTEFLKPRLVDIEQISSTHAKVILEPLERGFGHTLGNALRRILLSSMPGYAVTEVE
IDGVLHEYSSKEGVQEDIIEVLLNLKGLAVKVQNKDNVFLTLSKSGIGPVVAADITHDGD
VEIVNPDHVICHLTDENASINMRIRVQRGRGYVPASSRVHSLDEERPIGRLLVDACYSPV
DRIAYNVQAARVEQRTDLDKLVIELETNGTIEPEEAIRRAATILAEQLDAFVDLRDVRQP
EVKEEKPEFDPILLRPVDDLELTVRSANCLKAETIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLVSRGLSLGMRLENWPPASIAED
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgttacagaatttttaaagccacgtttagttgatattgagcaaattagt
tctactcatgctaaagtgatcttagaaccgttagagcgtggctttggtcatactctaggt
aatgcattgcgtcgaattcttctatcttctatgccgggctatgcagttaccgaggtggaa
atagatggcgtattgcatgaatatagtagtaaggaaggtgttcaggaggatattattgag
gtacttctgaacttaaaaggtctagcggttaaagtacagaataaggataatgtttttctg
acactaagcaaatctggaattggccctgttgttgcagctgacattactcatgatggtgat
gttgaaatcgtaaatcctgatcatgttatctgtcacttaacagacgaaaatgcgtctatt
aatatgcgtattcgtgtacaacgtggtagagggtatgtgccggcatcatctagagttcat
tctttagatgaagaacgtccgattggtcgtttgttagttgatgcttgttatagtccagtt
gatcgtattgcttataatgtacaagcagcacgtgttgaacaacgaactgacttagataag
ttggttattgaactggaaacaaatggcacaatcgagccagaggaagcgatccgtcgtgct
gcaacgattttagcagagcaactagatgcctttgttgatttgcgagatgttcgtcaacca
gaagttaaggaagaaaaaccggagtttgatccgattttattgcgtcctgttgatgactta
gagttgacagttcgttctgctaactgtttgaaagcagaaacaattcattatatcggtgat
ttggtacagcgtactgaagttgagttactgaaaacacctaatttaggtaaaaaatctctt
acagagattaaagatgtgcttgtttcacgcggtctatcacttggtatgcgcctcgaaaat
tggccaccagcaagtattgctgaagactag
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