Halapricum salinum: DV733_14040
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Entry
DV733_14040 CDS
T05943
Name
(GenBank) intein-containing tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hsn
Halapricum salinum
Brite
KEGG Orthology (KO) [BR:
hsn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hsn03016
]
DV733_14040
Enzymes [BR:
hsn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DV733_14040
Transfer RNA biogenesis [BR:
hsn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DV733_14040
Prokaryotic type
tRNA splicing ligases
DV733_14040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Intein_splicing
Motif
Other DBs
NCBI-ProteinID:
QCC52284
UniProt:
A0A4D6HDW9
LinkDB
All DBs
Position
complement(2848413..2851301)
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AA seq
962 aa
AA seq
DB search
MTTYDAGDVTLEKVREYVWEIPQEGEMNVPARVLASEALLEEISEDKTLEQLTNTTHLPG
IQKYAICMPDGHQGYGFPVGGVAGIDAEDGCISPGAVGYDINCLPGSTDVRLSFGRKMPI
ESVRDRFERERATVAGDSLTSSDIRLFTESGTKQVYEVQTATGETIEATADHPFATPDGM
VELGDLEAGDEALVQPFQGIEHDDPEEFTVLSVDDLEDANPQIRSVLKNRGLLPLKSTDE
AFNRLLKLVGFHLGDGSLGGEGQLWFYGEPEDLEGIREDVKAIGFKPSKVYSRDRDHDIE
GETFETTEYSFKTTSKALRLTLQKLGVPDGPKVAAGFSTPWYLDRLADWQKALFYSAYFG
AEMNAPAAQHDMNLYCPKVSQTRTVDTAGDGRRFLADLASFLGDLGIETNEIESFETDSN
REHDTVRLRLGVKNDSANLIRFFETVGYRYNRHKRRLAVKAIQYLKLKEREIERREHIAN
EVRTLADGGTPVETLKEKYDINDRFIERSAWSGRKGRPRPGDAFPTFDEFCEQTTVSDDM
TVESTIEHIEPAGEKAVYDIGVAHDAHNFLADGFVVSNCGVRMLKTNLTDSDVSGREEEL
VDALFDAIPSGLGGGGIFEGTKGDIDEILADGMEWALRNDYAVPADLEHCEDEGRRPDAD
PSAVSQKAKNRGKVQVGSLGSGNHFLEVQRVTDIFREDVAGEFGLEADQIVVLIHCGSRG
LGHQVCTDYLREIEKAHQGLLNQLPDKELAAAPAGSHLAEEYYGAMCAAINFAWVNRQLI
MHRTREVFADVFDREWEAMEMDLLYDVAHNIAKKEVHDVDGEDRELYVHRKGATRAFPAG
RPELPPAYSDVGQPIIIPGSMGAGSYVLRGGERSLEETFGSTAHGAGRLMSRTQAKNTYW
GEDVQDDLREQQHIYVKAQSGATVAEEAPGVYKDVDEVVNVSDALGIGDKVARTFPVCNI
KG
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgaccacctacgacgccggcgacgtcacgctcgaaaaggtgcgtgaatacgtctgggaa
attccccaagagggggaaatgaacgtgcccgcccgagtactggcgagcgaagccctgctg
gaggagattagcgaggacaagaccctcgaacaactcacgaatacgactcatctgccgggc
atccagaagtacgccatctgcatgccggacggccaccagggctacgggtttcccgtgggc
ggggtggcagggatagatgccgaagacggctgtatcagccccggagcggtaggatatgac
atcaattgcttgccggggtcgaccgacgtccggctgtcgttcggtcggaagatgccgatc
gaatcggttcgcgatcgattcgagcgagagcgggcgaccgtagccggggactcactcacc
agttcagatattcgactgtttaccgaaagcgggaccaagcaggtctacgaggtccagacg
gcgaccggcgagacgatcgaagcaaccgcggaccacccgttcgcgacacctgacgggatg
gtcgaactcggcgatctcgaagccggcgacgaagcgctggtccagcccttccagggaatc
gagcacgacgatcccgaagaattcaccgtcctctcggtcgacgacttggaagacgcgaat
ccacagatccgcagcgtcctcaaaaatcggggtctcttgcccctcaaatcgaccgatgag
gcattcaatcgcctgctcaaacttgtcggatttcatctcggtgacggctcgctgggtggt
gagggacagctctggttctacggggagccggaagatctcgaaggtatccgtgaggacgtg
aaagcgatcggattcaagccctcgaaggtctactcgcgcgaccgagaccacgacatcgag
ggcgagaccttcgagacgaccgaatacagcttcaagacgacatcgaaagcccttcgtctg
acgctccagaaactcggggtcccggacggtccgaaagtcgcggccggcttttcgacacca
tggtatctcgaccgacttgccgactggcagaaggcactcttctacagcgcgtacttcgga
gccgaaatgaacgcgccggcagcccagcacgacatgaatctctactgtcccaaggtttca
cagacccggaccgtcgatactgcaggagacgggcggcgattccttgcggacctcgcgtcg
ttcctcggtgatctcggtatcgagacgaacgagatagagtccttcgagactgactcgaac
cgcgaacacgacaccgtccgacttcgactgggtgtcaagaacgactcggcgaatctgatc
cgcttcttcgagacggtcgggtaccgctacaaccgacacaaacgtcggttggccgtcaaa
gcgatccagtatctcaagctgaaagaacgagagatcgaacgccgggaacacatcgcaaac
gaggtgagaacgctagcagacggtggaacacctgtcgagacgctcaaagagaagtacgac
atcaacgaccgattcatcgagcgcagtgcctggtccggtcggaaagggcgtccgcgtccc
ggcgacgcgttcccgacgttcgatgagttctgcgagcagacgactgtcagtgacgacatg
accgtcgaatcgacgatcgaacacatcgaacccgctggtgagaaagcggtctatgacatc
ggtgtcgctcacgacgctcacaatttcctcgcagacgggtttgtcgtctcgaattgcggc
gtccggatgctgaagacgaatttgaccgacagcgacgttagtggacgagaagaagaactc
gtcgacgcgctatttgacgcgattccgtcaggtctcggcggcggtggcatcttcgagggc
accaagggcgacatcgacgagattctcgccgacgggatggagtgggcgctgcggaacgac
tacgccgtccccgcggacctcgaacactgcgaggacgagggacggcggccggacgccgat
ccgagcgccgtttcgcagaaggcgaagaatcgcgggaaagtccaggtcggctcgctcggc
tcgggcaatcacttcctagaggtccagcgcgtcaccgacatcttccgcgaggacgtagcg
ggagagttcggactcgaagcggaccagatcgtcgtgctgatccactgtggctcgcgcggg
ctcggtcatcaggtctgcacggactacttgcgggagatcgagaaggcccatcaggggctg
ctgaaccagttaccggacaaggaactcgcggccgcccccgctggctcgcacctcgccgag
gaatactacggagcgatgtgtgcggcgatcaacttcgcgtgggtcaatcgccagctcatc
atgcaccgtactcgcgaggtcttcgcggacgtcttcgaccgggagtgggaggccatggag
atggacctgctgtacgacgtcgcgcacaacatcgccaagaaagaagtccacgacgtcgac
ggcgaggacagggagctgtacgtccaccgcaagggcgcgacgcgggcgttcccggcgggc
cggcccgagttgccgccagcctacagcgacgtcggccagccgatcatcatcccggggagc
atgggcgcgggcagctacgtcctccgggggggagagcgctcgctcgaagagaccttcggc
tcgactgcccacggggctggcagactgatgtcccggacgcaggcgaagaacacctactgg
ggcgaggacgtgcaggacgacctccgcgagcaacagcacatctacgtcaaagcccagagc
ggcgccaccgtcgccgaggaagcgcccggcgtctacaaggacgtcgacgaggtggtgaac
gtctcggacgcgctcggcatcggcgacaaggtcgctcggacgttccccgtctgcaacatc
aaggggtga
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