Histophilus somni 129PT: HS_0151
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Entry
HS_0151 CDS
T00386
Symbol
rnr
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hso
Histophilus somni 129PT
Pathway
hso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HS_0151 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hso03019
]
HS_0151 (rnr)
03016 Transfer RNA biogenesis [BR:
hso03016
]
HS_0151 (rnr)
Enzymes [BR:
hso01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HS_0151 (rnr)
Messenger RNA biogenesis [BR:
hso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HS_0151 (rnr)
Transfer RNA biogenesis [BR:
hso03016
]
Prokaryotic type
tRNA degradation factors
HS_0151 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ABI24429
UniProt:
Q0I0X1
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All DBs
Position
134810..137224
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AA seq
804 aa
AA seq
DB search
MITPKKTNKKAKKITALTEEPYFFQEQQKYSNPIPSREFILQIIRDFNAPMSKEDLFKTL
AIVDPEQKEGMRRRLRAMENEGQLVFTKRKCYALPEKLDLLKGSVIGHREGYGFLQIEGS
KSDWFIPNIQMQKVIHGDFVLAQPNGYDRKGRSEVRIVRVLESRNKHIVGRFFMEEGIGY
VVPDDSRINRDILIPNEFRNGARMGQVVVVELKPRTATFTQLVGKIVEILGENMAKGMET
EIAIRNHDIPHIFPSAVEKQVRKYTDSVPEEAKQGRRDLRTLPLVTIDGEDARDFDDAVF
CQRSGDGGWTLWVAIADVSYYVRLRTALDNEAYQRGNSVYFPNRVVPMLPEILSNGLCSL
NPQVDRLCMVCEIRISPQGKMTDYSFYEAVMNSYARLTYTKVAQILAGDELLQQRYHVLV
PHLQELHQMYQALLQARYQRGAIDFETIETKFVFNEMGRIECIEPMVRNDAHKIIEECMI
LANIAAANFMERHQEPALFRIHAGPSQEKLSAFRAFLRECGLTLKGGINPTTADYAQLLA
QVRERPDHELIQTMLLRSLSQAVYHPDNIGHFGLALTEYAHFTSPIRRYPDLTLHRSIKY
LLAKQQGSKRKTTDTGGYHYSLEEMDLLGDHCSLTERRADDATREVVDWLKCEYMQDHVG
DEFDGIISSVTGFGLFVRLDDLFIDGLVHISTLDNDYYQFDSIKQRLIGENSGTTYRLGD
KVKIRVEAVSLAQRQVDFVLLSSQRKPGRSGKTANKRAKQKSFQEKNRTSKIERHKSAVK
KTKNLSKKQQSPASKTRKQKKQKG
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgataaccccgaaaaagacaaacaaaaaagcgaaaaaaatcaccgcacttacagaagaa
ccgtattttttccaagagcaacagaaatattctaatccaatcccgagtcgagagtttatt
ttacaaattattcgtgattttaatgcacctatgtcgaaagaagatcttttcaagacattg
gctatcgttgatcctgaacaaaaagagggaatgcgtcgccgtttgcgtgcaatggaaaat
gaagggcaattggtctttactaaaagaaagtgttatgccttgcctgaaaaattggattta
ttaaaggggtcagtgattggtcatcgtgaaggctatggttttttacaaatcgaaggaagc
aagtcagattggtttattccaaatattcaaatgcaaaaagttatccatggtgattttgta
ttggcacaacctaatggctatgaccgtaaaggacgttcagaggtgcgtattgttcgagtg
ttagaaagtcgcaataaacatattgttgggcgttttttcatggaggaggggattggttat
gtcgtgccggatgatagccgtattaatcgtgacattctgattccgaatgagtttcgcaac
ggagcgagaatgggacaggtagttgtggttgaacttaaacctcgtacagcaacatttacg
cagttggttggaaaaattgtagaaattcttggggagaatatggcaaagggaatggaaact
gaaattgctattcgcaatcatgatattcctcatatttttccaagtgcggtagaaaaacaa
gtaagaaaatatacggatagtgtgccagaggaagcaaaacaaggacgaagagatttaaga
accttaccattggtaaccattgatggtgaagatgcacgagattttgatgatgcggttttt
tgtcaaagaagtggtgatggcgggtggacattatgggttgccattgccgacgtgagctat
tacgtacgtttgcgtactgcattagataacgaagcatatcagcgtggcaattcggtttac
tttcctaaccgagttgtaccaatgttgccggagattttatcgaatggattatgttcgctc
aatccacaagttgatcgtttgtgtatggtatgtgagatacgaatttcgccacagggaaaa
atgactgattacagtttttatgaagcggtcatgaactcatatgcaagattaacttacact
aaagttgcacaaattttggcaggtgatgaattattacaacaacgctatcatgttttagta
ccgcacttacaagaattgcaccaaatgtatcaggctctgctgcaagctcgttatcagcgt
ggagccattgattttgaaactattgaaactaagtttgtcttcaatgaaatgggacgtatt
gaatgtattgaacctatggtgcgtaacgatgcccataaaatcattgaagaatgtatgatt
ttagcaaatattgcagcagctaattttatggaacgtcatcaagaacccgctttattccgt
attcatgccggaccaagtcaagaaaaactcagtgcatttcgtgcttttctacgtgaatgt
ggcttaacgttaaaaggtggtataaaccccacaaccgcagattacgcacagttgttagcc
caagttcgtgaacgtccggatcatgaattaattcaaactatgctacttcgttcacttagc
caagctgtttatcaccctgataatattggacattttggtttagcactaacggaatatgca
cattttacctcgcctattcgccgttatcctgatttaacgttacatcgtagtatcaaatat
ttattagcaaaacagcaaggttctaaaagaaaaacaaccgataccggcggttatcattat
tccctggaagaaatggatcttctcggtgatcattgttctttaaccgaacgccgagctgat
gatgcaacaagagaagtggtagattggctaaaatgcgaatatatgcaagatcatgttgga
gatgaatttgacggtattatttcttctgtaaccggttttgggttgtttgttcgtttagat
gatttatttattgatgggctagttcatatttcaaccttagataatgattattatcaattt
gactcaataaaacaacgtttaattggggaaaattccggtacgacctatcgtctcggtgat
aaagttaaaatccgtgttgaggcagtcagtttagctcaacgccaagtggattttgtttta
ttatcgagtcagcgtaaacctggacgttccggcaaaacggcgaataagcgagcgaaacaa
aaaagcttccaagaaaagaaccgcacttctaagatcgagcgacataaaagtgcggtgaaa
aaaacgaaaaacttatcaaaaaaacaacaaagtccggcaagtaaaacaagaaaacagaaa
aaacagaaaggataa
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