Histophilus somni 129PT: HS_0174
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Entry
HS_0174 CDS
T00386
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase, DEAD box family
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
hso
Histophilus somni 129PT
Pathway
hso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HS_0174 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hso03019
]
HS_0174 (rhlB)
Enzymes [BR:
hso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HS_0174 (rhlB)
Messenger RNA biogenesis [BR:
hso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HS_0174 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
ABI24452
UniProt:
Q0I1X0
LinkDB
All DBs
Position
154500..155759
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AA seq
419 aa
AA seq
DB search
MQNSHLSQQRFSDLALHRSVQQAIKEKGFEFCTPIQALSLPITLKGQDIAGQAQTGTGKT
IAFLTATFHHLLQKNNINSSEQPRALILAPTRELVVQIANDANFLVQATGLKTGLAYGGE
GYDKQLKVIDQGIDILIGTTGRVIDYVKQGIIRLDYIQVVVLDEADRMFDLGFIRDIRYL
LRKCPVPQQRLTMLFSATLSYKVRELAFEHMNDPQYVEIEPLQKTGHRIREELFYPSNQD
KMALLMTLLEEEWPERCIIFSNTKHRCEEIWGYLSADGHRVGLLTGDVMQKKRLSLLKQF
TDGTLDILVATDVAARGLHIPDVTHVFNYDLPDDCEDYVHRIGRTGRAGESGISISFACE
EYAINLPAIEEYIGHSIPVSQYDAKALIEDLPTPHRIKRGAFDSRSNLQRTIKRLKKTY
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatagtcatctttcacaacaacgtttttctgatcttgctttacatcgtagcgtg
caacaagcgataaaagaaaaaggctttgagttttgtacacctattcaggcattgtcttta
cctatcactttaaaagggcaagacatagctgggcaggctcaaaccggcacaggaaaaacg
atcgcatttttaaccgctacatttcatcatttactacaaaaaaacaatataaattcctca
gaacaaccgagagcgttaattttggcaccgactagagaattggttgtacaaattgcaaat
gatgcgaattttctggttcaagcaacagggttgaaaacaggcttagcttatggtggtgag
ggctatgataaacaattaaaggtaattgatcagggtattgatattttaattggtactaca
gggcgtgtaattgattatgttaagcaaggaattattcgtttagattatattcaagtggta
gtgttagatgaagcagatcgaatgtttgatttaggttttattagagatattcgttattta
ttacgtaaatgtccggtgcctcaacaacgtttaaccatgcttttttctgcaactttgtct
tataaggttcgtgaacttgcttttgagcatatgaatgatccacagtatgtagaaattgaa
cccttacaaaaaacggggcatagaattagagaggagttattttacccttctaatcaagat
aaaatggcattgttgatgactttattagaagaagaatggccagagcgttgcattattttt
tctaatactaaacatcgttgtgaggaaatatggggatatttaagtgcggatggtcatcga
gtaggattattgaccggtgatgtgatgcagaaaaaacgcttatctttactcaaacaattt
acggatggaaccttagatattttggtggcgacagatgtggcagcacgagggttacatatt
ccggatgtgactcatgtgtttaattatgatttacctgatgattgtgaggattatgtacat
cgtattggaagaacagggcgagcgggtgaaagcggtatttcaatcagttttgcttgtgaa
gaatatgcgattaatctgcctgcaattgaagaatatattggtcacagtattcctgtcagt
caatatgatgcgaaagcattgatcgaagatttgccaacacctcatcggattaaacgaggt
gcatttgatagtcgttcaaatttacaacgtactataaagagattgaaaaaaacttattaa
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