Histophilus somni 129PT: HS_0198
Help
Entry
HS_0198 CDS
T00386
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hso
Histophilus somni 129PT
Pathway
hso03030
DNA replication
hso03430
Mismatch repair
hso03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HS_0198 (dnaE)
03430 Mismatch repair
HS_0198 (dnaE)
03440 Homologous recombination
HS_0198 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hso03032
]
HS_0198 (dnaE)
03400 DNA repair and recombination proteins [BR:
hso03400
]
HS_0198 (dnaE)
Enzymes [BR:
hso01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HS_0198 (dnaE)
DNA replication proteins [BR:
hso03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HS_0198 (dnaE)
DNA repair and recombination proteins [BR:
hso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HS_0198 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ABI24476
UniProt:
Q0I1U6
LinkDB
All DBs
Position
complement(180055..183531)
Genome browser
AA seq
1158 aa
AA seq
DB search
MSQPRFVHLRVHSDFSMINGITKVKPLIKACVQHEMVAMALTDFTNFCGLVRFYGEAQSS
GVKPIIGADVLVKSDLLGDELFELTLLAKNNEGYHNITLLLSKAYERGYYNLPYIDQSWL
AEHHEGIIILSGGRNGDVGKKLLKNNSADVETAVAFYQEYFPDHFYLSLSRTGRSDEDRY
IQSALILAQQKQLPLVATNDVCFLSPEDFEAHEIRVAIHDGYTLDDPKRPKLYSSQQYFR
SEQEMCELFADIPTALENTVLIAQRCNVTIRLGTYFLPKFPTGDLSPEDFLIQKSKEGLE
ERLQTLFPDPQVRSEKRKEYDDRLQTELDVINKMGFPGYFLIVMEFIQWSKDNDIPVGPG
RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPDRVSMPDFDVDFCMDKRDRVIEHVAET
YGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLIPADPGMTLTKAFEVEPRL
SEIYNNDEEVKALIDMARKLEGVTRNAGKHAGGVVISPSLITDFSPLYCDSEGKHPVTHF
DKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARLVKEGKSAVDISTIPLNDPDSFNLLK
KAETTAVFQLESRGMKDLIKKLQPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGVEPV
SYPDVKYQHESLKPILEPTYGVIVYQEQVMQIAQVLAGYSLGGADLLRRAMGKKKPEEMA
AQRDIFEKGAIAKGIDGDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAE
FMAAVMTSEMDNTDKIVSFYDECLRMGLTIVPPDINTGKHHFSVNDNGEIVYGIGAIKGV
GEVPINAIVSAREQGGIFKDLFDLCARVDLKKVNRRTFENLIKSGAFDKLGPHRAALAQN
LEDALKASDQHAKDEAIGQVDMFGVLTSSHEDVETAYAHTPRWSEKQILDGERETLGLYL
SSHPITRYLKELSHYSSTRLNELSPNTRGKISTVCGLIVALRFAVTKKGNRLGIATLDDR
SGLLDITLFADALERFGDKLQKDTVVIVSGTVSFDDFSQGLKMSVRELMTLDEARSRYAK
NLAISLSQEQITPHFIRQLKGIIEPFSGGSLPIHLYYQSKDGRALIRFGVQWSVYPTDEL
LSALVTMLGENAVELEFD
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagcctcgttttgtacatttgcgtgtacacagtgatttttccatgattaacggc
attactaaggtaaaacctttgataaaagcctgtgtgcaacatgaaatggtggcaatggca
ttgactgattttactaacttttgtggcttagttcgtttttatggtgaagcacaatcttca
ggcgttaagcctattatcggtgctgatgttctcgtgaaaagtgatttgttgggagatgaa
ctttttgaactgacgttattagccaaaaataacgagggttatcataatattaccttatta
ctttcgaaggcttatgaacgtggttattataatttaccttacattgatcagtcttggttg
gcagaacatcatgagggaattatcattttatccggtggtcgcaatggcgatgtagggaaa
aaattactgaaaaataattctgctgatgtggaaactgcggtagctttttatcaagaatat
tttcccgaccacttttatttaagtttaagtcgcaccggtcgatccgatgaagatcgctat
attcaatctgctttaatacttgcacagcaaaaacaattacctttagtagcaacaaatgat
gtgtgttttttaagtccggaggattttgaggcacatgaaatccgagtggctatccatgat
ggttatacactggatgatccgaaacgcccgaaattatacagttcacaacaatatttccgc
tcggagcaagaaatgtgtgagctgtttgctgatattcctaccgcacttgaaaatactgta
ttaatagcacaacgttgtaatgtcaccattcgtttggggacttattttttaccgaaattt
ccaacgggtgacttaagtccggaagattttttaatccaaaaatcgaaagagggattagag
gagcgtttgcagaccctgtttcctgatccgcaagtgcggtcggaaaaacgtaaagaatac
gatgatcgcttacaaaccgaactggatgtcattaataaaatgggctttcccggttatttt
ttgatcgtgatggagtttattcagtggtcaaaagataatgatattcctgtaggaccagga
cgtggttccggagcaggttctttagtcgcctatgcgttaaaaattaccgatttggatcct
cttgaatttgatttgctttttgagcgttttctcaatcctgaccgtgtttctatgccggat
tttgatgtggatttctgtatggacaagcgagatcgtgtgattgagcatgttgcagaaact
tatgggcgtggagcggtttcgcaaatcatcacatttggaacaatggcggcaaaagcggtt
attcgtgatgtggggcgtgtattgggacacccttatggttttgtggatcgtattgctaaa
ttaattcccgccgatccaggtatgaccttgacaaaggcttttgaggtagaaccgagatta
tccgaaatttataacaatgatgaagaagtgaaagccttaattgatatggcaagaaaattg
gagggagtaacacgtaatgcgggtaaacatgcgggcggtgtagttatttctcctagttta
attacagatttctcacctctatattgcgactcggaagggaaacatcctgttacacatttt
gataaaaatgatgttgaatatgcaggattagtgaaatttgactttttaggcttacgcacg
ctgaccattattaaatgggcattggatatgattaacgctcgtttagttaaagagggtaaa
agtgcggtagatatttcgacaattcctttaaatgatcccgattcatttaacttgttgaaa
aaagctgaaaccacagcagtcttccagctggagtcgaggggaatgaaagatcttatcaag
aaacttcagcccgactgttttgaggatattattgcacttgtagcattattccgccccggt
cctttagagtctggaatggtgcaaaactttatcgatcgtaaacacggagtggaacctgtt
tcttatcctgatgttaagtatcaacatgaatcccttaagccgattttagaacctacctat
ggggttattgtttatcaagaacaagtcatgcaaattgcacaagtactggcgggatacagc
cttggcggtgcggatttattgcgtagagcgatgggtaagaaaaaacctgaagaaatggcg
gcacaacgagatatttttgaaaaaggtgcgatagcaaaagggattgatggcgatttagcc
atgaaaatctttgacttagtggaaaaattcgccggttatggttttaataaatctcattct
gccgcttatgctttggtttcttatcaaaccctttggttaaaaacacattatcccgctgaa
tttatggcagcggtgatgacctcagagatggataacacagacaagatcgtgagcttttat
gatgagtgtttacgtatgggtcttactattgttccccctgatattaatacaggcaaacat
cattttagtgtgaatgataatggtgaaattgtttatggtattggtgcgataaaaggcgtt
ggagaagtcccaataaatgcaatagtttcagcccgtgaacaaggcggaatttttaaagat
ttattcgatctttgtgcaagggtcgatttaaaaaaagttaatcgtcgcacctttgaaaat
ctaattaaatccggtgcatttgataaattgggtccacatcgagccgcacttgcccaaaat
ttagaagatgcgttgaaagcatcggatcagcatgcaaaagatgaggcgataggacaggtt
gatatgtttggtgtactaacttcaagccatgaagatgttgaaaccgcttatgcacacacg
ccacgttggagcgagaaacaaattttagacggtgagcgtgaaacattaggtttgtattta
agcagtcatccgattactcgttatttaaaagagttgtctcattacagttcaacacgttta
aatgagttatctccaaacactcgaggcaaaataagtactgtttgcggtttaattgtagca
ttaagatttgcagtgacgaaaaaaggaaaccgattaggtattgcaactttagatgaccgt
tctgggcttttagatataacgttgtttgctgatgctttagaacgctttggtgataaatta
cagaaggataccgttgttattgtttccggtacagtcagttttgatgatttttctcaaggg
ctaaaaatgtctgtacgagagttaatgactttagatgaagctcgtagtcgttatgcaaaa
aatttagccatcagcttatcccaagagcaaataacaccgcactttattcgccaactcaaa
ggaattattgaaccttttagcggcggttctttgccaatacatctttactatcaaagtaaa
gacggacgagctttgatacgcttcggtgtgcaatggtctgtttatccaacagatgagtta
ttgagtgcactggtaacaatgttaggagaaaatgcggttgagcttgaatttgactaa
DBGET
integrated database retrieval system
