Histophilus somni 129PT: HS_0497
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Entry
HS_0497 CDS
T00386
Symbol
uvrD
Name
(GenBank) ATP-dependent DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hso
Histophilus somni 129PT
Pathway
hso03420
Nucleotide excision repair
hso03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HS_0497 (uvrD)
03430 Mismatch repair
HS_0497 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hso03400
]
HS_0497 (uvrD)
Enzymes [BR:
hso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HS_0497 (uvrD)
DNA repair and recombination proteins [BR:
hso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HS_0497 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
HS_0497 (uvrD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
Viral_helicase1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ABI24774
LinkDB
All DBs
Position
538228..540408
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AA seq
726 aa
AA seq
DB search
MDISELLNDLNEKQRNAVVAPLGNYLVLAGAGSGKTRVLTYRIAWLSAVEKIPESSIMAV
TFTNKAAMEMRHRIEATLARYSHQRVFGMWIGTFHSIANRLLRSHYADAGLPQDFQILDS
EDQLRLVKRLMKLHQYDEKTFPYKQACWYINNKKEEGLRPNQIEDNNDRQEREWIKIYKI
YQDACDRAGLVDFAELLLRAYELWLKNPHILQYYQQRFQHVLIDEFQDTNKIQYAWIKLL
AGSQGNVMIVGDDDQSIYGWRGAQIENIHRFLKDFAKAKIIRLEQNYRSTGNILESANRL
ISNNSNRLGKDLWTAGEKGEPVGIYAAFNELDEALFVSGQVQNWLDNGGKVDDCAVLYRS
NSQSRVIEEAFLRAKIPYRIYGGMRFFERQEIKDALAYLRLIANRQDDAAFERVVNTPPR
GIGERTLDILRNLTRERQVTLWQATQLAIQENLIPIRSVTVLLRFIELINSLQQETAEMP
LFVQTDFVIKHSGLYDMYKQEKGDKGEVRIENLEELVTATREFIKPDEAEDMSDLVAFLT
HASLESGEEQAASHQPCVQMMTLHSAKGLEFPRVFIVGMEEGLFPSFRSGEDLARLEEER
RLAYVGITRAKQKLTLCYAEVRRLYGKDEKHIPSRFIAELPQECIQEVRLRGTVTRAYNR
SAVGSIVKTDLSDNSWKVGQKVKHEKFGQGTVINVEGADNNTRLQIAFQGQGIKWLIAHL
AKLEKI
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggatatttcagaattacttaatgatcttaatgaaaaacaacgcaatgctgttgttgca
cctttgggtaattatctcgtacttgctggtgctggaagcggaaaaactcgagtattaacg
tatcgtattgcttggttaagtgcggtagaaaaaatacctgaatcaagtattatggcggta
acttttaccaataaagcagcgatggaaatgcgtcatcgtattgaggcaactttagctcgt
tattcccatcaacgtgtattcggtatgtggattggcacttttcacagtattgccaatcgc
ttattgcgatcccattacgcagatgccggattgccacaggattttcaaattttagacagt
gaagatcaacttcgcttagttaagcgtttgatgaaattgcatcaatatgatgaaaaaacc
tttccctataaacaagcttgttggtatatcaataataaaaaagaagaaggattacgccct
aatcagattgaagataataatgatcgtcaagagcgagagtggatcaagatctataaaatt
tatcaagatgcttgtgatcgtgcaggattagtggattttgctgaattattattgagagct
tatgaattgtggctaaaaaatccacatattttgcaatattatcaacagcgttttcagcac
gttttgatcgatgaatttcaggatactaataaaattcaatatgcttggattaaattatta
gccggttcgcagggcaatgtaatgattgtcggagatgatgaccaatctatctatggttgg
cgtggtgctcaaattgagaatattcatcgttttcttaaagattttgcaaaagcgaaaatt
attcgtttagagcaaaattatcgttcaaccggcaacattttagaaagtgcaaaccgttta
atttccaataatagtaatcggttaggtaaggatctttggactgcgggtgaaaaaggagaa
cctgtggggatttatgcggcttttaacgagttggatgaggctttgtttgtctccggtcag
gtacaaaattggctggataacggcggtaaggttgatgattgtgcagttttatatcgtagc
aatagccaatctcgtgtgatagaagaggcatttctcagagctaaaattccttatcgcatt
tatggcggtatgcgattttttgaacgacaagagattaaagatgctttagcgtatttgcgt
ttaattgccaatcgacaagatgatgcggcttttgaacgtgttgtaaatacgccaccacga
ggtattggtgagcgtactttagatattttgcgtaatttaactcgtgaaagacaagtgact
ttatggcaagcaactcagcttgccattcaagaaaatttaattcctatccgttcggtaact
gttttgttacgttttattgaattaatcaattccttacaacaagaaaccgcagaaatgccc
ctatttgtacaaactgattttgtgattaaacattccggtttatatgacatgtataaacag
gaaaagggggacaaaggggaagtgcgaattgaaaatttggaggaattggttaccgcaacg
agagaatttataaaaccggatgaggctgaagatatgtctgatttagtggcgtttttaaca
catgcctctttggaatctggagaagaacaagcagcctctcatcagccttgtgtgcaaatg
atgacattgcattcagcgaaaggcttagaatttccaagagtatttattgttggtatggaa
gaggggcttttcccaagttttcgttcgggtgaagacttggcacgtttggaggaggaacgc
cgtttagcttatgtagggattactcgagcaaaacagaaattgacattgtgttatgcggaa
gttcgccgcttgtatggtaaagacgaaaaacatattccttctcgttttattgctgaatta
ccgcaagaatgtattcaagaagttcgtttacgtggcacagtgactcgagcttataaccga
agtgcagtgggttctatcgtcaaaactgatttatcggataatagttggaaagttggacaa
aaggtgaaacatgaaaaatttggtcagggaacagtgattaatgttgagggggctgataat
aatacccgattacaaatcgcttttcagggacaaggtattaaatggctaatcgcgcattta
gccaaattggaaaaaatttag
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