Histophilus somni 129PT: HS_0661
Help
Entry
HS_0661 CDS
T00386
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
hso
Histophilus somni 129PT
Brite
KEGG Orthology (KO) [BR:
hso00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hso03016
]
HS_0661 (rnb)
Enzymes [BR:
hso01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HS_0661 (rnb)
Transfer RNA biogenesis [BR:
hso03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HS_0661 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
DUF7842
DUF2274
Motif
Other DBs
NCBI-ProteinID:
ABI24938
UniProt:
Q0I2X2
LinkDB
All DBs
Position
complement(707927..709906)
Genome browser
AA seq
659 aa
AA seq
DB search
MFQNNPLLSQLKQQIRDSKPHVEGIVRGSDKAFGFLECDKKSYFIPPMAMKKVMHGDKIK
AVIETIGDKEQAEPEELIDPMLTRFIAKVRFNKDKKLQLVVDHPQINQPIGATQTKAVKE
ELQEGDWVVAQLKNHPLRDDRFFFAHISEFICHADDELAPWWVTLAHHEQSRYPVQGQES
YHMLDQQDREDLTALHFITIDSETTKDIDDALYIEPINENEAQVGWKLVVAIADPTAYID
VNSQIEQDARQRCFTNYLPGFNIPMLPRELSDDLCSLSENAQRAALVCYITTDLQGEITA
TPYFVSAYVMSKAKLAYDKVSDYLEQKTGCWQPQDPVTQQQIAWLHEFTLARSQWRKTHA
LLFKEKPDYSFVLAENGKVQEIKTEYRRIANQIVEEAMIIANICAAQYLNEKIGFGIFNT
HSGFDKKFLENAHHFLLSNLTSEQNQAELKQRYSVENLATLSGYCNMRHDIGASENNYLE
LRLRRFLTSAEFKTELAPHFGLGLQGYATWTSPIRKYSDIVNHRLIKASLTTQQYERPQD
SILQRLQEARRQNRLVERDIADWLYCRYLADKVEQKQIFQAEIQDVMRGGLRVLLLENGA
SVFIPASTLHSNREELQVNAEEIALYIKGEKTYKIGDIIHVQLVDVKEETRSIIGNIAN
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaaaataatcccctactttcccaactcaaacaacaaattcgtgatagtaaaccg
catgtagaaggtattgtaagaggttctgacaaagccttcggtttccttgagtgtgataaa
aaaagttattttattccgccaatggcaatgaaaaaagttatgcatggcgacaaaattaaa
gcagtgattgaaacgattggcgataaagaacaagctgaaccggaagaactcattgacccc
atgctaactcgctttattgccaaagtgcggttcaataaagacaagaaattacaacttgta
gtcgatcacccccaaattaatcaaccaattggagcgacacaaacaaaagccgttaaagaa
gaattacaagagggagattgggttgtggcacagctaaaaaaccatcctttacgtgatgat
cgttttttctttgcacacatttctgaatttatttgtcacgctgatgatgaacttgcacct
tggtgggtaactttggcacatcatgaacaatctcgttatcctgtacagggacaagaaagt
taccacatgttggatcaacaagatcgtgaagatctcaccgcacttcacttcatcactatt
gatagtgaaacaacaaaagatatagatgatgctttatatattgagccaatcaacgaaaat
gaagctcaagtcggctggaaattagtagttgcgattgccgatccaactgcttatattgat
gttaattcacaaattgaacaagatgccagacaacgttgtttcactaattacttgccggga
tttaatattccaatgttgcctcgagagttatccgacgatctttgctctctttccgaaaat
gctcaacgtgccgcattggtttgttatatcacaacagatttacaaggtgaaattaccgct
acaccatactttgtctctgcttatgtaatgtcgaaagctaaactagcttatgataaagtg
tctgattatttagaacaaaaaacaggctgttggcaaccacaagatcctgttactcaacaa
caaattgcatggttacatgagtttaccttagctagatcacaatggcgtaaaactcatgct
ttactgtttaaagaaaaaccggactactcttttgtactggcagaaaatggtaaagtacaa
gagatcaaaacagaatatcgtcgcattgcaaaccaaattgttgaagaagcaatgattatt
gcgaatatttgtgcggcacaatatctgaatgaaaaaattggttttgggatttttaatact
catagtggtttcgataaaaaattcttggaaaatgcacatcatttcctgctgtcaaattta
accagcgaacaaaatcaagcagaattaaaacaacgctattctgtagaaaatttagcaacc
ttaagtggatactgcaatatgcgtcatgatattggagcaagcgaaaataattatcttgaa
ttgcgtttacgtcgtttcttaacctcagcagaatttaaaacggaattagcaccgcacttt
ggcttaggtttgcaaggttacgccacatggacatctccaattcgtaaatattcggatata
gttaatcatcgcctaattaaagcaagtctcacaacacaacaatatgaacgccctcaagat
agtatcttacaacgtttacaagaggctcgtcgtcaaaaccgtttagttgagcgagatatt
gcagattggttatattgtcgctatttagcagataaagtagaacaaaaacaaatatttcaa
gcagaaatacaagatgtcatgcgtggcggattacgtgtacttctattggaaaatggtgct
tccgtctttattccggcatcaaccttacacagcaatagagaagaacttcaggtcaatgcc
gaggaaattgcactttatattaaaggagaaaaaacatacaaaattggcgatataattcat
gttcaacttgtggacgttaaagaagaaacgagaagcattattggaaatattgctaactaa
DBGET
integrated database retrieval system
