Histophilus somni 129PT: HS_0704
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Entry
HS_0704 CDS
T00386
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase CsdA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hso
Histophilus somni 129PT
Pathway
hso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HS_0704 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hso03019
]
HS_0704 (deaD)
03009 Ribosome biogenesis [BR:
hso03009
]
HS_0704 (deaD)
Enzymes [BR:
hso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HS_0704 (deaD)
Messenger RNA biogenesis [BR:
hso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HS_0704 (deaD)
Ribosome biogenesis [BR:
hso03009
]
Prokaryotic type
rRNA helicases
HS_0704 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABI24981
UniProt:
Q0I2S9
LinkDB
All DBs
Position
749193..750998
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AA seq
601 aa
AA seq
DB search
MTETTITFNDLGLPEFILNAVSEMGFSTPSPIQQACIPHLLNGHDVLGMAQTGSGKTAAF
SLPLLAKIDTNEKYPQMLVMAPTRELAIQVADACEQFVKFSKGVRIVTLYGGQRYDIQLR
ALKQGAQVVVGTPGRILDHIRRGTLDLSNLQSIVLDEADEMLRMGFIDDVETVMAELPEQ
HQTALFSATMPAPIKRITKRFMHNPQEVKIQSTQRTAPDITQSCWYVRGFRKNEALLRFL
EVEDFDAAIIFTRTKTATLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILV
ATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRAGRAILFVEPKERRLLGNI
ERLMKKAIEEVEMPNHLALQECRRKNFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDI
AAAMLMLLQGKQKLILPEDPVFEKHSRRNDRRERGERRGKENPRSERHGYGTPQPMDLYR
IEVGRCDGVEVRHVVGAIANEGDIQSRYIGHIKLYDTYSTIELPQGMPKELLQVFAKTRV
LNKQMRMSFVSAVNSEEEFEAGSGGKRKGRYEREFRGGRKFNEKSNRSFSEQRKERRERK
R
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaacaacaattacttttaatgatttagggttacctgaattcatccttaatgca
gtgtccgaaatgggcttttcaactccttccccaattcaacaggcttgtatcccgcatcta
ttaaatgggcatgatgtgcttggcatggcacaaaccggtagtggaaaaacagcggcattt
tctttgccattattggcgaaaattgatactaatgaaaaatatccacaaatgttagtaatg
gcaccaacccgtgagttggctattcaagttgctgatgcttgtgaacagtttgtgaagttt
tctaagggggtgcgtattgttactctgtacggcggacaacgttacgatattcaattaaga
gctttaaaacaaggtgctcaagtggtcgtcggaacaccggggcgtattttagatcatatt
cgtcgtggtacattggatctgtcaaatttacagtctattgtattagatgaagcggatgaa
atgctacgcatgggatttattgatgatgttgaaaccgtcatggcggaacttccggagcaa
caccagaccgcacttttctctgcaacgatgcctgctccaattaaacgaattacaaaacgc
tttatgcacaatccgcaagaagtaaaaattcagtcaacacaacgtactgcaccggatatt
acgcaaagttgttggtatgttcgcggttttcgtaaaaatgaagcattgttgcgtttctta
gaagtggaagattttgatgctgcaattatttttactcgaactaaaacagctacattagat
gtcactgaattattggaaaaacacgggtttcgtgcagctgcattaaatggagacatgaca
cagcaattacgtgagcaaacattagatcgtcttcgcaatggaagtcttgatattttagtg
gcgactgatgttgcggctcgtggtttagatgttgaacgtattagtttagttgttaattat
gatattccgttggatgcggaaagttatgttcaccgtattgggcgtacaggccgagcaggt
cgtgcgggccgtgcgattttgtttgttgagcctaaagagcgtcgtttattggggaatatt
gaacgcttaatgaaaaaagcaattgaagaagtggaaatgcctaatcatcttgctttacaa
gaatgtcgccgtaaaaacttcgtagctaaaatcactaagcaattagaacatcatgatcta
gaacaatatcgtagcttattggaagatttatttacggcagatcaggatcaggaagacatt
gccgcagctatgttgatgttattacaaggcaaacaaaaacttattcttcctgaagatcca
gtgtttgaaaaacattcacgacgtaatgatcgtagagagagaggggagcgtcgaggtaaa
gaaaatccacgttctgagcgtcatgggtatggtactccgcaaccaatggatttatatcgt
attgaagtcggtagatgtgatggtgtcgaggttcgtcatgttgtaggtgcaattgcaaat
gaaggggatattcaaagtcgttatattggacatattaaactttatgacacttattcaacg
attgaattgccacagggcatgccaaaagaattgttacaagtatttgctaaaacgcgtgta
ttaaataaacagatgcgtatgtctttcgtaagtgcggtcaattctgaggaagagtttgaa
gccggctcaggtggtaaacgaaaagggcgttatgaacgtgagtttcgtggtggacgtaaa
tttaatgaaaaaagtaaccgctctttttctgaacagcgtaaagaacgcagagaaagaaag
agataa
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