Hippoglossus stenolepis (Pacific halibut): 118098060
Help
Entry
118098060 CDS
T08308
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03030
DNA replication
hsp03410
Base excision repair
hsp03420
Nucleotide excision repair
hsp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118098060 (rfc1)
03410 Base excision repair
118098060 (rfc1)
03420 Nucleotide excision repair
118098060 (rfc1)
03430 Mismatch repair
118098060 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hsp03032
]
118098060 (rfc1)
03400 DNA repair and recombination proteins [BR:
hsp03400
]
118098060 (rfc1)
DNA replication proteins [BR:
hsp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
118098060 (rfc1)
DNA repair and recombination proteins [BR:
hsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
118098060 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA
BRCT
AAA_22
PTCB-BRCT
AAA_5
AAA_30
AAA_17
AAA_14
RuvB_N
Rad17
AAA_7
AAA_33
AAA_16
BRCT_2
nSTAND3
AAA_18
NTPase_1
RNA_helicase
Nexin_C
AAA_19
Motif
Other DBs
NCBI-GeneID:
118098060
NCBI-ProteinID:
XP_034997372
LinkDB
All DBs
Position
2:complement(17170025..17179219)
Genome browser
AA seq
1192 aa
AA seq
DB search
MDIRRFFQPTAAKPAVHKPAPNGNVKAEEKKKKNSKPLSPEDEVKQKKKASNKVKSPKTE
DKRKDGEKKRKKSAVIESDSEEEEPVRKSKNSPKEKQKSSRAAPPPKKDPVQYVSETDSD
SDNFQSLKKVSQTKHDDTSKLRKSEAESARPGAKEVAKPPVKSPSTRAKTGLKSPPVLVS
PKSPPQTRQTPTSVMDYFGSSTIQRSEKKLVASTKRKAPIQDTEDLISDEELARQLQMSE
EMELEKQVHEDEEFARTLAMLEEEPQAKKARKGSDDKQAQAAFPKKSCTDSAAGSPSSPP
TRIKSEDVISPTPKKNLSPVKASSKLAMMKKRDEENNTGSKSKTLISPSKIKTSPKKEPI
ASSSSHMKLTPKTGTTPTALKTSPKKPESTSTSPDDAEKKKGNSAAFRNFLNRDGPRALG
SKEIPTGAENCLEGCVFVLTGVLESMERDDTKSLIERYGGKVTGNLSKRTTYLVQGRDSG
VSKLDKANIFGTKILDEDALLELIRTKPGKKSKYEIAAEAESKASKTRTPPSRTSKSTPK
AQKISPSKGNSRSPHTPSPSKTGLAQGHGRSTRSGGTPPVRGSSHTARRELGLSSSCSTS
APPPSSSSTTAEDASLLWVDKYRPRSLKTVIGQQGDQSCANKLLRWLQNWHKNHSGTVSK
PPVRFGKFGGKDDGSGFKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASSTRSKNSLK
QVVAESLNNTSIESFYKGTSNTVSSKHVLIMDEVDGMAGNEDRGGIQEMMGLIRSSKIPI
ICMCNDRNHQKIRSLANYCFDLRFQRPRVEQIKGAMMSLTFKEGIKIPPPALNEIILASN
QDIRQVIHNLSMWSAKDKVMTYDQCKSDAASARKDMKLGPFDVCRKVFALGDETSHMSLI
DKSDLFFHDYSLAPLFVQENYLHVRPAAASGDLKSHLVLLSKTADSISDGDLVDRQIRSR
QNWSLLPTQAIYASVLPGELMRGYMSQFPTFPSWLGKHSSTGKHSRIIQELNSHMSLKTL
SSRQAVNLDYLHYLRQALVSPLQRHGAEGAGQAVQLLDSYNLIKEDVDSIMEISVWGGQP
DPYSKLESKVKAAFTRAYNKEIHLTPYSLQIVKKGRGAGGGAGGAGGAGGGGESELGGEE
MDNGRHESEEEGEGLKADAMIKQKKAKATKESKEKKEDSGKGKGKGKGKAKK
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcgcttctttcaaccgactgcagcgaagcctgcggtgcacaagccggcc
ccaaatggaaacgtgaaagctgaagagaagaagaagaagaatagcaagccgctgtctcca
gaggatgaagtgaagcagaaaaagaaagcgagcaacaaggtcaaaagcccaaaaacagaa
gataaacgcaaggatggtgagaaaaaacgaaagaagtctgccgtcatagagtcggactcg
gaggaggaggagccagtcaggaagtcaaagaattcccctaaagagaaacagaagagcagc
agggcagcgccgcctcctaaaaaagatcctgtgcaatatgtctctgaaacagactcagac
agtgacaactttcagtccttgaagaaggtttcccaaaccaagcatgacgacacgtccaaa
ctgaggaagtcagaggcagagagtgctcgtccgggggccaaagaggtggcgaaacctccc
gtcaagtcgccctccacgcgggcaaaaactgggctcaagtctcctccagtgcttgtatcc
cccaagtcgcctcctcagaccagacaaacccccacctcagtgatggactacttcggcagc
agcactattcagcgctcagagaagaagctggtagccagcaccaaacgaaaggctcccatt
caggacacagaagatctgatcagtgatgaggagcttgccagacagctgcagatgagtgag
gagatggagctggaaaagcaggtccatgaggatgaggagtttgccagaacactggccatg
ctggaagaggagccccaggccaagaaggctcgtaaaggctctgatgacaaacaagctcaa
gctgcatttcccaagaagagctgcacagactctgctgctggcagcccgagcagtccaccg
accaggatcaagtcggaggacgtgatcagtccgactcctaagaagaacctttcccctgtc
aaagccagctccaaactggccatgatgaagaaaagagatgaagagaacaacacagggtcg
aagagtaagaccctcatttcaccctcaaaaattaaaacctctcccaagaaggagcccatc
gcttcatcgagctcacacatgaagctcacacccaaaacaggaacgacacccacggcactt
aaaacgtctcccaagaaaccagagagcacaagcacgagtcctgacgatgctgagaagaag
aaaggtaactcggcagctttcaggaacttcctcaacagagatggaccacgagctctgggc
tccaaggaaattccaacgggagcagagaactgtttggagggctgtgtgtttgtgttgacg
ggggtcctcgagtctatggagagagatgacaccaaatccctcatcgagcgctacggaggc
aaggtgacgggcaacctcagcaaaaggaccacctacctggtgcagggcagggacagcgga
gtctccaaactcgacaaggccaatatttttggaaccaagatcctggatgaggacgctctg
ctggagctgatcagaaccaaaccagggaagaagtccaagtatgagattgctgcagaggca
gagagcaaagcttctaaaaccaggactccccccagccgaacgtcaaagagcacccccaaa
gcccagaagatctctccttcaaagggtaattccaggtcccctcacaccccgagcccgtca
aagaccggcctggcacaaggtcacgggagatcgaccagaagtggcggcactccacctgtc
agaggctcaagtcacacggcccggagggagctgggcctttcctcctcatgttcaacttca
gccccaccaccatcatcatcatccacaactgcagaggacgccagcctgctgtgggtggac
aagtaccgcccgcgctctctgaagactgtgattggccagcagggggatcagagctgcgcc
aataagctgctgcggtggctgcagaactggcacaaaaaccacagtggcaccgtttccaag
cctccagtaaggtttggcaagtttggagggaaagatgatggatcaggatttaaagctgct
ctgctctctggtcctccgggggtggggaagaccacgactgctgccctcgtctgtgaagag
ttgggcttcagctacgtggagatgaacgccagcagtactcgcagcaaaaacagcctgaag
caggtcgtcgcagagtcactgaacaacaccagcatcgagagcttctacaaaggcacgtct
aatacagtgagcagtaagcatgtcctgatcatggatgaggttgacggcatggctggtaat
gaagaccgtggaggaatccaggaaatgatgggcctgatcagaagctcaaagattcctatc
atctgcatgtgcaatgatcgtaaccatcagaagatcaggtcactcgccaactactgcttc
gatctgcgcttccagaggccgcgagtggaacagattaagggagccatgatgtcccttact
ttcaaagagggaatcaagatccctcctccagctctcaacgaaatcatcctggcttccaat
caggacatccgccaggtgattcacaacctgagcatgtggtctgctaaagacaaggtgatg
acctacgaccagtgcaagtctgacgcagccagcgcccgcaaggacatgaagctggggccg
tttgacgtttgcaggaaggtgtttgccttgggcgatgagacctcccacatgagcctcatc
gacaagtccgacctcttcttccacgactattcactagctccgctcttcgtccaagagaac
tacctgcacgtccgtccagcggctgccagtggagatctgaagtcccacctggtgttgctc
agcaagacagcggattccatctcggacggagatctggtggacagacagatacgctctcgg
cagaactggtctctgctgccgacccaggccatctatgccagtgtgttaccaggtgagctg
atgagaggctacatgagtcagttccccacatttcccagctggctcggcaagcactcgtcc
accggtaaacattcccgtatcattcaggagctgaactcacacatgagtttaaagacattg
agcagcagacaggcggtgaacctggactacctgcactacctgcggcaggcgctggtgagc
ccactccagaggcacggagctgagggcgccggtcaggccgtgcagctgctggacagctac
aacctcatcaaggaggacgtggacagcatcatggagatcagcgtctggggcggacaacct
gacccctactccaaactggagtctaaggtgaaggcagctttcacacgcgcctacaacaaa
gaaattcatctcacaccctactcgctgcaaattgtgaagaaaggccgtggtgctggtggt
ggtgctggtggtgctggtggtgctggtggtggtggggagtcagagctgggaggagaggaa
atggacaatggacgtcacgagtcagaggaggaaggagagggcctgaaggccgacgctatg
attaaacagaagaaggcaaaggccaccaaggagtcgaaagagaagaaagaagattctggg
aaaggaaaaggcaaagggaaaggcaaagctaagaaataa
DBGET
integrated database retrieval system
