Hippoglossus stenolepis (Pacific halibut): 118098426
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Entry
118098426 CDS
T08308
Symbol
rttn
Name
(RefSeq) rotatin
KO
K16484
rotatin
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
hsp03037
]
118098426 (rttn)
Cilium and associated proteins [BR:
hsp03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
118098426 (rttn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RTTN_N
TPR_Trm732_C
Nup188_N-subdom_III
DUF4628
PWP3A-B_C
Motif
Other DBs
NCBI-GeneID:
118098426
NCBI-ProteinID:
XP_034998114
LinkDB
All DBs
Position
19:10898641..10931699
Genome browser
AA seq
2228 aa
AA seq
DB search
MELSPLIKKIAHSLVEIRVRALKSIISKLDHSLISVCDIVQEKMLFVYLLEWFNFPEVPM
QEQVLELLTTLSKHPSAAQMLRDVGAVDFLTQLSPNVEPRLRAVISGTLDQLFQLPELLH
SRTMVYSHGPRDAALTAPTVVPPEDFPKMGYFHKSMPARTEVPPHKIPVHESVRCLKFSV
FPWLTLTNTDRHILSSNESSLRSNNPNLVRTTCDLLCDVIMQDFPPEIFLQRPSIVKNLL
SLLRGGAGKGEPSYLHLQAVSCLRQLCAGLRRRLRFHQDPSFYSTKQDPVSQNSSFSYSQ
EVRGTQRSNASSPGGECSPRPSVVGRTGQRARGDGQDGDVASNSGSSNRGGAATQAPRQT
AQSPADTAHLELPDLGAEDVLELQLQQLTLAQFTVSIMEHAIPLLKTEGSHVFHRVLGLL
CDAILLLGDSVCELVWDDRSLVGMELKEKLQAFMELLGDILSYHQSHPADIPHSAQIHHR
MAYTGTAIFTIKLLQTILPPEKAGDNLPESTATAVFHLCLDTSLGSLFPSVQETAVAYLE
QVNSDHHDLYSRVTRAALWMESTCNFLKEAQAEGEKNWLELLELADQAIDGLPFHQHLPI
VKECVHICSYLWKFDQPSPLLQTESQKLLLKLLSHPLPSVKTDTYTCALNLVKDCVGIQN
VSRQQKGACDAINFLLHHRVLYELSAFGLQDSAEKVNVAAKDILLFLLKGRLMMTASTWD
RFNEALYPVMPILQGYAGTEESLGNCVLLISDTSDVTRDNVFPSSAKLKAALRLLFTKQP
AVRTAAAQQVIPHLTNADEAKTVRQDQDQPVISMLPNLYCVRNPLDISLDTNSKSVLKVE
SVEKLFCILSSDTVDISLKRSAAGQLSVVLQDTTMHPVLKNLGITDKVLSFIMGSVNGNK
SLDCLLEPCICILRKLVYADPSLRHSLAQRNLLLLTLLRASLILKENKSSGNEIAILMSL
LLFDEIAGIEIWSDKSSTDVTLAPFSLPLTVIRRYNLPFQAASHHAVSPYCCVLPSSSGL
LTLAPARQALQVAWNTAWHSGIDNLLEELHGPTRDPEFHPDLKLSDEQVLWLRAVHLPAA
LPDCIQAIGRAAGHRSVTSALSRLSLYLLIDRLALPHVPSHSCRDTLHSLSWHSAMTRFL
QVRPACVEDERLLVGIVAFLNAYFRQMHTESASDPEDEDLRWILEVLLSQESVSLLNLLL
AVETQTSTQNTGEPEELKNHVGQRLQRELTGFFNTLLLRLSCTTDRLCLALAGPFKSQLA
VCLLRSLRVSDAPRFYGLPSLERTLQGMVSLTAEPGWSSHCPDLEPVSLCSKYLSGLLEV
ISSFYVEWGGNSMSFMGKGVTKNAVISLLHLSHEMLTENKDKDFISQWSLGNEAAAEEAS
NSQLGLAWLIPLWVDRDPEVRFASLALGGALSSVPSGCQTLCASCQNISGGLWGTLLNIL
LDQQESSMVRREAAFILQNLLVMPMPANAEEAKDSDWQHPCVHDEVSGLSLVGLPALQAL
LYHCQFFQHVALSASICYRGRYTFHVQPAGSGSSQESESLDSESSLWFWRCDPPAPAASS
RRPSSSLSTSSTVIRGSEPHIPKAFSSLSISEDTPASRLTAQGQSDTDTSDSVTSQDSRQ
CEPLAAEPVVMVTPDLLTAHCGLLTSLLSILPEFTLTAIGHNQLLQALSSLVEIRPIEKC
LNELNSPNVLPGEREDIKSQFVTLLQLLSGFSKLLQSCITVNQELIPELDFTKQLLTTLV
AVLMLDTKGLDAGTRDTVCLCWADVFMLLATLVRRDSSAAYPSVSAALGKRWRTFAGTLS
VCVTEKFADPQLHTVALQFLCAIFTEETKSRGDEATTPNSKCATSLTDIVNGPSAGQLCE
LLLQSFDKRTLQDPLKKLTARALTTLLACSPTAQSHAADAGLIDSCVEQMKQTHSQLHLE
SVRPSKASLRKKEEAHLKEVRLSVEILRSALYRNDECKVVASDARLTLTLYALWPWLLLD
DPNMEAVLELLCVYTANCTTACSSLCGSIPPGSKGSSSSSLMHAVMKLASGLAPDNSPVQ
KLAFSLLTNLAMSRDCRGLLQKNNFLQAFVSVPVPKAGGGGGVLGLWLKLLVTLSFAEDI
QQSLLRVTGVLELLADLAAHRRNALLTLHNLCLWPANKPHVIASDKAMKTLLCCLESKEM
ETRCMGASALWALLHNNQRAKTTMKCPSIRRRIDEAHTISKKAAENNPDPMGPYLLKCFE
NLSQLLNN
NT seq
6687 nt
NT seq
+upstream
nt +downstream
nt
atggagctatcgcccctcattaagaaaatagctcactcgctggtggagatacgcgttcgg
gcgctgaagagcatcatctccaagctggaccactccctgatctccgtctgcgacatcgtc
caggagaagatgctgttcgtgtatctgctggagtggtttaatttccccgaggtgccgatg
caagagcaggtcctggagctgctcaccaccctgtcaaagcatccgagtgcagcccagatg
ctgagagacgtcggggcggtggacttcctcactcagctgtctcctaacgtggagcccaga
ctgcgagctgtcatcagtggaaccctggaccagctgttccagctgcctgagcttctccac
agcagaacaatggtctactcgcatggaccacgtgatgcagctctgacagctccgactgtt
gttccacctgaagattttcctaaaatgggctatttccacaagagtatgccagctcgtaca
gaagttccacctcacaagatcccagtgcacgagtctgtgagatgtctgaagttttctgtg
tttccatggctgactttgacaaacacagacagacacatactttcatccaatgagagttcc
ctaaggagcaacaacccaaacttggtgcgaaccacatgcgatcttctgtgcgatgtcatt
atgcaggactttcctccagagatcttcctgcagaggccaagtattgtaaagaaccttctt
tccctattgagggggggtgctggtaaaggtgagccgagctacctccacttgcaggctgtc
tcctgcctgcggcagctttgtgcagggctaaggaggagactgcgctttcatcaagatcca
agcttctactctacaaagcaagatccagtgtcccagaattcctccttctcctactcccag
gaggtgcgggggacccagcgttccaatgcctcctccccagggggagagtgctctccccga
ccctctgtggtgggacgcacgggccaaagagccaggggagatggccaagatggggatgta
gcttccaacagtggcagctcgaacaggggtggagctgcaacccaggcccccaggcagacg
gcccagtcacctgcagatacggcccatctggagcttcctgacctgggggcggaagatgtc
ctggagctgcagttacagcagctcactctggcccagttcacggtttccatcatggagcat
gctataccgcttcttaagacagagggttcgcatgtgttccatcgtgttctggggctgctc
tgtgacgccatcctcctgctcggggacagcgtgtgtgagctggtctgggacgatcgcagc
ctggtggggatggagctgaaggagaagctgcaagcctttatggagttattgggcgatatc
ctgagctaccatcagagccacccagcagacattcctcacagcgctcagattcaccacaga
atggcttacacaggcacggccatatttaccattaaactcctacagaccatcctccctcct
gagaaggctggtgacaatctcccagaaagcactgcgacagctgtattccatctatgcttg
gacacatctttggggagtttattccccagtgtgcaagagacagcagtagcttacttggag
caggtgaactctgaccaccacgacctctactcgagggtgacccgtgctgccctctggatg
gagtccacttgcaactttctcaaggaagcacaagctgagggagaaaaaaactggttggag
ttactggagctggcagaccaggccatcgacggcctcccgtttcaccagcacttacccatc
gtcaaagaatgtgttcacatctgctcttacctgtggaagtttgatcagcctagcccgctt
ctccagacagagagccagaaacttctcctcaagctgctgtctcatcctttaccttccgtc
aagacggatacgtacacatgcgcactcaacctggtcaaggactgcgttggcatccagaat
gtgtcacgacagcaaaaaggagcctgtgatgcaatcaacttcctgctccaccacagagtg
ctctatgaattaagtgcgtttggactccaggactcggcagaaaaagtgaacgtggctgcc
aaggatatcctgctattcctgctcaagggacgattgatgatgacagcatcaacctgggac
agattcaacgaggcactttacccggtcatgcccatattgcagggttatgccggcaccgaa
gagtcactgggtaactgcgtcctgctgataagtgacacgtcggacgtgacaagagacaac
gtgtttccaagctcagccaaactaaaagcagcactccgtctccttttcacgaaacagcct
gctgtgagaacagcagcagcgcaacaagtcattcctcacctaaccaacgctgatgaagct
aaaacagtcagacaagaccaggatcaaccggtgatctccatgctgcccaatctctactgt
gtcagaaatcctttggacatctcactggacacaaacagcaagtctgtcctcaaggtggag
tcggtggagaagctgttttgtatcctgtcctcagacactgtcgacatctctctgaaaaga
tcggcagccgggcagctgtctgtggtgctgcaagacacgacaatgcacccagtgctgaag
aatcttggaataacagacaaagtcctttctttcattatgggaagtgtcaacggcaacaag
agcttggattgcctgctggagccttgtatatgtatcctgaggaagctggtgtatgctgat
ccatctctgaggcacagcctggcacagcgcaacctcctgctcctcacactgcttagggca
tccctgatattgaaggagaacaaaagcagtgggaatgagatcgctatcttaatgagtttg
ctgttgtttgatgagattgccggcatcgaaatatggtcggacaaatccagcacagatgtg
actctcgcaccgttctcccttcctctgacagtaatacgcaggtacaacctcccgttccag
gcagcgagtcatcacgccgtcagcccgtactgctgcgtcctgccttcatcctctggcctc
ctgaccctggcccctgctcgccaagccctgcaggtggcctggaacactgcatggcattct
gggatagacaacctccttgaggagctgcatggtccaaccagggaccctgaatttcatccc
gacttaaagctgtcagacgaacaggttctgtggctgcgggcggtgcacctccccgccgcg
ctgccggactgcatccaggccatcggcagggcagcaggacacaggtctgtgacctctgcc
ctctccaggctcagcctctacctgctgattgacagactggccctcccgcatgtccccagc
cacagctgcagagacactcttcactcgctcagttggcactcagcaatgaccaggtttctc
caggtgcgtccagcctgtgttgaggatgagaggttgctggtgggcattgttgcatttttg
aatgcctacttcagacagatgcacaccgagtctgcttctgacccagaggacgaggacctg
cgttggatactagaggtgcttctcagccaggagtcagtgtccctcctgaatttgctgctt
gctgtggagactcagacctcgactcagaacacaggggaaccagaggaactgaagaaccac
gtcggccagagactgcagagagaactcaccggcttcttcaataccttactcctccgacta
tcatgcacgactgacaggctatgtttggcattagccggccccttcaagagccagctggca
gtgtgtctgcttcggagcctgcgggtgtccgatgccccgcgattctatggccttcccagc
ctggagaggacgctgcagggcatggtcagcctgactgctgagcctggctggagctcgcac
tgccctgacctggagcctgtctccctctgctcaaagtatctcagtgggctgctggaggtg
atctcctctttttatgttgagtggggaggaaactcgatgtcgttcatggggaaaggtgtg
acgaagaatgccgtcatctctctgcttcacctgtcgcatgagatgttgactgaaaacaag
gacaaggacttcatttcccagtggtctttggggaatgaggcagctgccgaggaggctagt
aactctcagctgggtttggcctggctcatcccactatgggtggatcgagacccagaggtg
aggttcgccagcttggctctgggtggagctctgtcgtcggtgcccagcgggtgccagact
ctgtgtgcgagctgtcagaacatcagtggaggtctgtggggcacgttgctcaacatcctc
ctggatcagcaggagagcagcatggtccgcagagaggctgcttttatcctgcagaacttg
ctggtgatgccgatgcctgccaacgcagaggaggccaaggactcggactggcagcaccca
tgtgtccatgatgaggtgtctggcctctctttggtgggtctcccggcgctccaggctctg
ctctaccactgtcagttcttccagcatgtggctctctctgcctccatttgttaccgaggc
aggtacacgttccacgtacaacctgctggcagtggcagttcccaggagagtgagtcactg
gattctgagagttctctgtggttctggagatgcgaccctccagcaccagctgctagctct
cggagaccctccagctccctctctacatccagcactgtgattagaggctcagagccacac
atccctaaggctttctcctcactgagcatctcagaagatactcctgccagcaggctgacg
gctcaaggccagagtgacacggacaccagtgactctgttacctcccaagattccagacag
tgcgagccattggccgcggaacccgtcgtcatggtaactcccgacctcctgacggcccac
tgcggcctgctgactagtctgctgtccatcctgcctgagttcaccctcactgccatcgga
cacaaccagctcctccaggccctgtccagtctagtggaaatcaggcccatcgagaaatgt
ctgaatgagctgaattcacccaacgtgctgccaggagagagagaagacatcaagagccag
tttgtcaccttactccagctcctgtccggcttctcgaagctgctgcagtcgtgtatcaca
gtgaaccaggaactgattcctgagctggacttcacgaaacagctgttgacgactctggtt
gcagttctcatgctggacaccaaaggattagatgcaggtacgcgggacacggtttgtctg
tgctgggcagacgtgtttatgctcctggctactctggtgaggagggacagctcagcggcg
tacccatctgtctccgctgcgctggggaaacgctggcggacatttgcaggaacattatca
gtgtgtgtgactgagaagtttgcagaccctcagctccacacagtcgctctgcaattcctc
tgtgcaattttcacagaggagactaagagtcgaggtgacgaggccacaacccctaactcc
aagtgtgcaacttctttgactgacattgtgaatggtccctcggccggccagctctgtgaa
ctgttactccagagttttgataagaggacccttcaggaccctttaaagaagctgacagca
agagctctgacgacgctgttggcatgcagccccacagctcaaagccatgcggccgatgct
ggtttaatcgacagctgtgtggagcaaatgaagcagactcattcccagctccacctggag
tcagtccgacccagcaaggcttctctccgcaaaaaggaagaagcccatttaaaggaagtc
aggctgagtgtggagatcctgcggagcgctctttaccgcaacgatgaatgcaaagtggtg
gcttcagatgctcgcctcacactgaccctctatgctctttggccttggctcctattggac
gaccccaacatggaggcagtgctggagcttctgtgtgtctatacagccaactgcaccaca
gcatgcagttctctctgtgggagtataccgccaggatcgaaaggctcctccagtagctct
cttatgcacgctgtcatgaagctggcctcagggctcgccccggacaacagcccggtccag
aagctggccttctctctcctcacaaacctcgccatgtcccgcgactgcaggggcctcctg
caaaagaataacttccttcaagccttcgtttcggtgccagtacccaaggcaggtggtggt
ggcggcgtactgggcctgtggctgaagctgctggtcaccctctcgttcgcggaagacatc
cagcagagtctcctgagggtgaccggagtcctggagctgctggcggacttggcagctcac
cggcgaaatgcgctgctcacccttcacaacctctgcttgtggcccgccaacaagcctcac
gtcattgccagtgacaaagccatgaagacgctcctctgctgcctggaaagcaaagagatg
gagactcgctgtatgggagcgtccgcactttgggccttgctccataacaatcagagggcc
aagacgacgatgaagtgtccctcaatacgacggagaattgacgaggcacacaccatctct
aagaaagctgcagagaacaatccggatccgatgggtccctacctattgaagtgctttgaa
aacctttcccagctgctaaataactga
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integrated database retrieval system
