Hippoglossus stenolepis (Pacific halibut): 118098449
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Entry
118098449 CDS
T08308
Symbol
lsm5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03018
RNA degradation
hsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118098449 (lsm5)
09123 Folding, sorting and degradation
03018 RNA degradation
118098449 (lsm5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118098449 (lsm5)
03041 Spliceosome [BR:
hsp03041
]
118098449 (lsm5)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118098449 (lsm5)
mRNA degradation factors
5'-3' decay
Lsm complex
118098449 (lsm5)
Spliceosome [BR:
hsp03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
118098449 (lsm5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
118098449
NCBI-ProteinID:
XP_034998150
LinkDB
All DBs
Position
19:18859915..18861952
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AA seq
91 aa
AA seq
DB search
MAATPTTNPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLIPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgactccaacaacgaacccgtcccagctgctcccgctcgagctcgtggacaaa
tgcatcggctcccggattcacatcgtcatgaaaacggacaaagaaatcgtcggcaccctt
ctgggtttcgatgattttgtcaatatggtcttggaggatgtgacagagtttgaaatcaca
ccagagggacggaggataaccaaactggaccagatcctcctgaacggcaacaacatcaca
atgctcatacctggaggagaaggtcctgaagtttga
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