Hippoglossus stenolepis (Pacific halibut): 118098466
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Entry
118098466 CDS
T08308
Symbol
col9a1a
Name
(RefSeq) collagen, type IX, alpha 1a
KO
K08131
collagen type IX alpha
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04510
Focal adhesion
hsp04512
ECM-receptor interaction
hsp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118098466 (col9a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118098466 (col9a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118098466 (col9a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
hsp00535
]
118098466 (col9a1a)
Proteoglycans [BR:
hsp00535
]
Extracellular matrix (ECM) proteoglycans
Others
118098466 (col9a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
118098466
NCBI-ProteinID:
XP_034998191
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Position
2:complement(29437318..29451583)
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AA seq
687 aa
AA seq
DB search
MSLSRICRASLLVILLQVLLICSAQRGPVGPRGAAGPPGVAGVPGVDGIDGDRGEDSTVN
GGPGPDGDNGKDGAAGAAGLPGADGPVGPPGDPGPLGTKGLKGDAGGRGTAGEPGVGPDG
LDGIPGTDGLPGELGKVGASGARGKRGQVGLPGAAGPRGPAGVYQGEDLCPNACPSGLNG
HSGLPGMKGHKGVKGESGEPGRQGHKGEEGDQGLQGDVGAQGLPGPGGARGLPGILGSKG
DRGPRGSFGGVGPRGIQGGPGDPGQRGAIGEAGPGGVSGDRGPQGIRGGPGPKGEAGLPG
PDAREGIPGLPGTKGLPGKNGAPGDGGLQGLPGMPGTYGQKGHAGGKGSTGDPGAAGLMG
SPGKQGERGEQGEVGPVGPRAGPGERGERGPEGPLGSPGARGGKGDPGLPGLPGPAGYRG
QNGDRGAVGLDGPGGEQGPAGSEGTSGDRGDLGEQGEGGEKGSTGPPGETGNKGPEGGRG
QPGKEGKSGQSGPRGMQGDGGVPGLPGSQGPAGKAPTDTHIKQVCMRVMQEQLAQLAASL
SRPESGVSGLPGPPGPPGPPGSSGENGFPGHSGSRGLPGLKGPSGVMGRKGPKGDHGDRG
DRGHTARGPKGAPGAPGQSGNSGRPAYGNDGRDGERGPRGAPGIPGVPGPPGTSGLNGYC
ESSQCILAMVASPVSAKDSGMKGPNEM
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgtccaggatctgtcgggcgtctttactggtgattttactgcaagtcctcttg
atctgctcggctcagaggggcccggtgggtcccagaggcgccgcaggcccgcccggagta
gccggcgtgcccggagtggacggcatcgatggcgacagaggagaagactccacagtgaac
ggtggaccaggccctgacggcgataacggcaaagacggagctgccggagctgcaggcctc
ccgggcgcagacggacccgtgggacctcctggagatccaggtccactcggcacaaaggga
ctgaagggagatgctggaggacgagggacagctggagagcctggtgtcggacctgacgga
ctcgatggtatccctggtacagacgggctgccgggggaattgggcaaagttggcgcctct
ggggcgagagggaagagaggacaggtcggacttcctggtgccgccgggcctcggggacct
gcgggtgtgtatcaaggagaagacctgtgtcctaacgcctgcccctcgggtctcaatgga
cactctggtctccccggcatgaaaggccacaaaggggtcaagggtgaatccggtgagcct
ggaagacaaggacacaagggggaggagggcgatcaaggcctgcagggagacgtcggagct
cagggactaccaggtccaggtggagcaagaggcctcccgggaatattgggctccaaaggg
gacaggggacctcgtgggagttttggcggtgtgggtcctcgggggatccagggaggccca
ggcgacccaggccagagaggagccataggcgaggccggaccggggggagtgtcgggggat
cgaggaccacaaggaatcagaggagggccgggtcctaaaggagaagctggtttgcctggt
cctgatgctcgggagggaatacccgggctgccaggaaccaagggtcttcccgggaagaat
ggcgctccaggtgacggcggcctgcagggacttcctggtatgccaggcacttatggccag
aaaggacacgccggtgggaagggcagcacaggagatccaggagctgcaggactgatgggg
tcgccggggaaacagggcgagcgtggcgagcagggagaggtgggaccagtcggacccaga
gcaggaccaggtgaacgaggagaacgagggcccgaggggcctctaggatccccaggagcc
cggggaggcaaaggggatccgggccttccaggacttcctggacctgctggttatcgcggt
cagaatggagacaggggagcagtcggtcttgacggacccggaggggagcagggaccagcg
ggttccgaggggacgtctggagacagaggagacctgggagaacaaggagaaggcggagag
aaaggatcgactggtccaccaggagagacgggaaataaaggacccgagggcggccgagga
cagccagggaaagagggcaagtcgggccagtcgggaccgcggggcatgcagggcgacggg
ggggtaccgggcctccccggatcccagggaccagcgggaaaagcaccgacagacacacac
atcaaacaagtttgcatgagggtgatgcaagagcagctggcccagctagcagccagcctg
agcaggcctgagtcaggagtctctgggctgcctggcccccccggcccgcctggacccccg
ggatcctctggggagaacggtttccccggacactccggatctcgaggactgccagggctg
aagggtccgtctggggtcatgggtcgcaaaggacccaaaggtgaccacggtgaccgaggc
gacagaggacacacggcgagaggacccaaaggagcacccggagcgcccggtcaatcaggt
aattcgggtcgaccggcttacggcaacgacggccgtgatggagagcggggacctcggggc
gctcccggtattcctggcgtgcccgggcctcccggtacctcgggtctgaacggttactgc
gagtcgtcgcagtgcatcctagcgatggtggcgtcgccggtttcagcgaaggactccggc
atgaagggccccaacgagatgtga
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