Hippoglossus stenolepis (Pacific halibut): 118098688
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Entry
118098688 CDS
T08308
Symbol
trpc1
Name
(RefSeq) short transient receptor potential channel 1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hsp04040
]
118098688 (trpc1)
Ion channels [BR:
hsp04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
118098688 (trpc1)
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Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
MTR4-like_stalk
LHD_TRPY1
TALPID3
Motif
Other DBs
NCBI-GeneID:
118098688
NCBI-ProteinID:
XP_034998643
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Position
19:13741251..13754643
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AA seq
796 aa
AA seq
DB search
MHISVGPYSLSVVMSALYQGTDTSSPDKFLALKDVREVKEETTLDEKLFLLACEKGDYYM
VKKLLEENRRGELNINRVDVLGRDAVTITIENENLDILQLLLEHGCQATDALLVAIDSEV
VGAVDILLNHRPRRSSKPSIAKLMQRIQNPEYSTTMDVAPVILAAHRNNYEILTMLLKQD
ISLPRPHAVGCECTLCNAKNKKDSLRHSRFRLDIYRCLASPSLIMLTEEDPILRAFELST
DLRELSLVEVEFRNDYEELAKQCKMFAKDLLAQARNSRELEVILNHTSNEDHVDKRGLLE
ERMNLSRLKLAIKYNQKEFVAQSNCQQFLNTVWFGETASYRRKHTCLKMATVLSVAMLWP
LLSVCYLLVPRSRVGQIIHTPFVKFIIHSASYFTFLLLLNLYSLVYNEGKKNTMGPALEM
IDYLLILWIIGMVWSDVKRLWYEGLEDFLEESRNQLSFVMNSLYLSTFALKIVAHSKFKN
VEDTERKNWDAFHPILVAEGLFAFANVLSYLRLFFMYTTSSILGPLQISMGQMLQEFGKF
LGLFLLVLFSFTIGLTQLYGKDQKDPNKTPAKDCEGIFCQQQSNDAFHTFMGTCYALFWY
IFSLAHVALFVTRITYTEELRSFVGAMIIGTYNIVVVIVLTKLLVAMLHKSFRQIANHED
KEWKFARAKLWLSYFDDKCTMPPPFNILPSPKTVVYIVTSMSKWICSHTSKGKVKRQNSL
KEWRNLKQKRDENYQKIMCCLVHRYLTSTRQKMQSTDQATVENLNDLRQDLSKFRNEMRD
LLGFRTSKYAMFYPRS
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgcacatcagtgtcgggccgtactcgctctccgtcgtcatgtcagctctgtaccagggc
acggacacgtcctctccggataaatttctggccctgaaagacgtgagggaggtgaaggag
gagacgacgctggacgagaagctgttcctgctggcctgcgagaaaggtgactactacatg
gtgaagaagctcctggaggagaaccgacgcggcgagctcaacatcaaccgcgtggacgtg
ctgggccgagacgccgtgaccatcaccatcgagaatgagaacctggacatcctgcagctg
ctcctggagcatggctgccaggcgacagatgccttgttggtggccatagactcagaggtg
gtgggagctgtggacatcctcctcaaccacaggcccaggcgatcgtccaagccctccatc
gccaaactgatgcagcggatccagaacccggagtattccaccaccatggacgtggctccg
gtcatcctggccgcgcacaggaacaactacgagatcctgaccatgctgctgaagcaggac
atctcgctcccccggccccacgccgtcggctgcgagtgcacgctctgcaacgccaaaaac
aagaaggacagcttacgacactccaggttccggctggacatctaccgctgcctggcgagc
ccctctctgatcatgttgaccgaggaggaccccatactcagggcctttgagctgagcaca
gacctcagggagctcagtctggttgaggtggagttcaggaatgattatgaggagctggcg
aagcagtgcaagatgttcgccaaggacctgctggcacaggctcgaaactctcgagagctg
gaagttattctcaatcacacgtccaacgaggatcacgtcgacaagagaggcttgttggag
gagcgcatgaacctcagccgactcaaactcgccatcaagtacaaccaaaaagagtttgtg
gctcagtccaactgccagcagttcctcaacaccgtgtggttcggagagacggcgagctac
cgtcgcaagcacacctgtctgaagatggccacggtgctgagcgtggccatgctttggccg
ctgctctccgtctgctacctgctggtgccgcggtcgcgcgtgggccagatcatccacacg
cccttcgtcaagttcatcatccacagcgcctcctacttcacgttcctgctgctgctcaac
ctctactctctggtctacaacgagggcaagaagaacaccatgggccccgcgctggagatg
atcgactatctgctcatcctgtggatcatagggatggtgtggtcggacgtgaagcggctg
tggtacgaggggctggaagactttctggaagagtcgaggaaccagctgagcttcgtgatg
aattccctttatctctccacctttgccctgaagatcgttgctcatagcaagttcaagaac
gtggaggacaccgagaggaagaactgggacgcgttccatcccatcctggtggccgagggc
ctgtttgccttcgctaacgttctcagctacctgcgcctcttcttcatgtacaccaccagc
tccatactggggccgctgcagatctccatgggtcagatgctgcaagagtttggaaagttc
ctgggcctcttcctgctggtgctgttctccttcaccattggactcactcagctttatgga
aaggaccagaaggacccaaacaagactccagccaaggactgcgagggcatcttctgccag
caacagagcaatgatgcattccacacgttcatggggacctgctacgccctcttctggtac
atcttctccctggcgcacgtggcgctcttcgtcacccgcatcacctacacggaggagctg
cgctccttcgtgggcgccatgatcatcggcacctacaacattgtggttgttattgtcctg
accaagctgctggtggcgatgctccataaaagcttcagacaaattgctaatcacgaagac
aaggagtggaagtttgcccgggccaagctgtggctgagctacttcgatgacaagtgcacg
atgccaccgccgttcaatatcctcccgtcgccaaagaccgtggtttacattgtgaccagc
atgagcaagtggatctgttcacacacctcgaaggggaaggtgaagagacagaacagcctg
aaggagtggaggaacctgaagcagaagcgcgatgagaactaccagaagatcatgtgttgc
ctggttcaccgctacctgacctccacccggcaaaaaatgcaaagcacagaccaggccacg
gtggagaacctgaacgacttgcgccaagacctctccaagttccgcaacgagatgagggac
ctgctgggtttccggacgtccaaatacgccatgttctacccgaggagctaa
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