Hippoglossus stenolepis (Pacific halibut): 118098705
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Entry
118098705 CDS
T08308
Symbol
spata13
Name
(RefSeq) uncharacterized protein spata13 isoform X1
KO
K05769
Rho guanine nucleotide exchange factor 4/29
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
118098705 (spata13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsp04131
]
118098705 (spata13)
Membrane trafficking [BR:
hsp04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
118098705 (spata13)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhoGEF
SOS1_NGEF_PH
SH3_1
SH3_9
SH3_2
PH
Motif
Other DBs
NCBI-GeneID:
118098705
NCBI-ProteinID:
XP_034998662
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Position
19:12258017..12273391
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AA seq
1280 aa
AA seq
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MSWAEQKDRGLSTSEDPLPCVHNSKADPLIRSRPLSDIYPFQSQGDRSAVPYLVSGCGAQ
VQPVTAGPLTEENKLNSINSSAWSNPVIGQPEGKPYPSRIMRLFSNSRKGPVPAHSPTTD
SPTSVDSNDSNGGPQSWSGLPGLGVVGSFKKLRSSVLQGIQSRGAANLDEEYLPSSNPEM
VNGTIVADTDPDLDNGTNHLKTAEGYSLSNGNITVHTLAMGQCSSDVEDYDDEENDEGDG
LTRNSRLSRSIKRAYGAGRISLFDLGRGRVAGSSANEAADSQKPDQTCTVNVQTKSTNHN
TNVKVLNRMSKSADNLHIFKAPFRRKAPSLGPQSPQDEAQGTSMSNGKPYIQRTASASSV
DLRGHAVNYNKNPVKTKAPMLKLVGSMTDLTVRRRRSPSPSSTSAMSSLCRLHDDYSRRV
PCPQTSERQRRPSPVRARVMSVEHTPLVHHQPEDDINPQQHRVLISPVSVDPPDSAETSP
GSSGHCELQAIATREQLEDCDSSPLSHKETSTQDEEKSLQFKVTSEVREAFLQADEMSPT
TSSSTPPISPTSLSESPTSSASSTDAAAMTTETSSVKSRRRAGRSRPRPISDYGQLISRK
HSIPEEVAEMRAEERTENASLHKDCSDDDMCVNRESPENSNMNGDGQCRRYRPISVIGAG
DLFPPDAEEKEDRLPSPVSRPPIPSHQVPPYRAVSARFRPSALSQSTPIGLDRVGRRKLH
RVLSDGASECSATLDDSVSEEEEGGSFDELTDATPYLQPGVEISVLNEWISSGHTVYAEA
LWDHVTMEEQELAFKAGDVIRVLEASHKDWWWGRGADREAWFPSSFVRVRVNQEDSSADS
VDSVADQEDPAPRDTHSAQHREQMRTNVVQEIMNTERIYIKHLKDICEGYIRQCRKHPEM
FTELQLKTIFSNIEDIYRFQRQFLKDLEKNYNKDQPHLSEIGSCFLLQEEGFSIYSEYCN
THPVACAELQRLMKLGRFKHFFEACRLLQQMIDISIAGFLLTPVQKICKYPLQLGELLKY
TPKDHSDFSGVSKAYDAMKNVASLINESKRRLESVDTIAHWQVAILHWEGPDVLERSSEL
IHSGELARAVRQGKMQQRSFFLFDHQLVFCKKDVLRRDLLHYRGRLDMDQTEVLDMPDGR
DLDLGLTLRNALRLRDASTLEFVCVLCCRKAQDKQRWLEAFAKERHRVKEDQEMGMEISE
DQRKQAIVNARRAKQGKIKPIGYSGSVPPHHPQNLHPLHQRHVTIPTSVPQQQVFSLAEP
PKRKPYHLLYSITRNAFFKK
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atgagctgggcagaacaaaaggacagaggcttgtctacaagcgaagaccctctcccgtgc
gtccacaactcaaaagctgatccgttgatccgaagccgacccctcagtgacatctacccc
tttcagagtcaaggtgacaggagtgcagtcccatatctggtgtctggatgtggcgcacag
gtacagcccgtgaccgcgggtcctctcactgaggagaacaaattgaacagtatcaactcc
tctgcttggtccaaccctgtaataggtcaacctgaaggaaagccttacccctcaagaatc
atgaggctattttctaactcgaggaagggccctgtccctgctcacagtccaaccactgac
agtcccacctcagtcgacagcaacgacagcaatggtggcccccagtcctggtccggactt
ccaggactgggtgttgtgggctccttcaaaaagctccgctcctctgtgcttcagggtatt
cagagtagaggggcagcaaacctcgatgaggagtatttgccttcatcaaatccggaaatg
gttaatggcacaattgtagccgacactgaccctgatctagataatggaacaaatcattta
aaaacagcagagggatacagtttgtcgaatggaaatatcactgtgcatacgttggctatg
gggcagtgcagctcagatgttgaggactatgatgatgaggaaaacgatgaaggagatggt
ctcacacggaactcccgattatccaggagtatcaagagagcgtatggggcaggacgcatt
tcattatttgacttggggagaggaagggttgctggaagcagcgcaaacgaagctgctgac
agtcagaaaccagatcagacatgcacggtcaacgtccaaacaaaaagcacgaaccacaac
acgaatgtgaaggtgttgaacagaatgagcaaaagcgcagacaaccttcacatatttaag
gcacctttcagacgcaaagccccatctctaggtcctcagtctcctcaggatgaggcgcag
gggactagcatgtcaaatgggaagccatacatccagagaacagccagcgcctcctcagtg
gacctgcgaggtcatgctgttaattacaataagaaccctgtgaagaccaaggcgccgatg
ctgaagctggtgggcagcatgaccgacctgactgtccgacgcaggcgaagtccctccccc
agctccacatctgccatgtcatccctctgccgtctccatgacgactactccagacgtgtg
ccttgcccacaaactagtgaacgacagcgccggccttcgccggtcagagcgcgagtcatg
tctgtcgaacacacaccactggttcatcaccagcctgaagacgacataaacccacagcag
caccgggttctcatcagcccagtctctgtggatcctccagattcagcagagacttcacct
ggttcctctggtcactgtgagctgcaggctatagcaacaagggaacagttggaggattgt
gattcatctccactcagtcacaaagagacttcaacacaagatgaggagaagtcactacaa
ttcaaggtgacatcagaagtgcgagaagcatttctccaagcagatgaaatgtctccgaca
accagcagcagcacacctcctatctccccgacaagcctctcggagtcacccacgtcttcc
gcgtcgtccacagatgcagcagcgatgaccacagaaacgtcctctgtcaaatctaggcga
agggccgggcgttcgcgaccacggcctatttctgactacgggcaacttatttccaggaag
cactctattcctgaggaagtggcagagatgcgtgctgaggaaaggacagaaaatgcatca
ctgcataaagattgcagtgatgacgacatgtgtgtgaacagagaaagccctgagaactca
aacatgaatggggacggtcagtgcaggaggtatcggcccatctcggtgataggagccggg
gatctgttcccccctgatgctgaggagaaggaagaccgccttccttctcctgtgtcacgg
ccgcccatcccctcccaccaggtccccccctacagagcggtgtctgccaggtttcgccct
tcagctctttcccagagcacccccatcggactggatcgcgttggacggcgaaagctccac
agagtgctcagcgatggtgcgtctgagtgctcggcgacgcttgatgacagcgtgagtgag
gaggaggaggggggcagctttgatgagctcactgatgccacgccctacctccagccaggg
gtggagatctccgtgctaaacgagtggataagctcaggccacacggtgtatgcggaggct
ctctgggaccatgtgaccatggaggagcaggagctggccttcaaggctggagatgttatc
cgtgtcctggaagcctcacacaaggattggtggtggggcagaggcgctgacagggaagcc
tggttcccctccagctttgtgagagtgcgagttaaccaggaggactcgagtgcagacagt
gtggatagtgtagcggaccaggaggatccggcacccagggacacgcacagcgctcagcac
agggagcagatgagaaccaatgttgttcaggaaatcatgaacactgagcgcatctacatc
aagcacctgaaagacatctgtgagggttacatccgccagtgccgtaaacacccggaaatg
ttcactgagctgcagctgaagaccatcttcagcaacatagaagacatctacagatttcag
aggcagtttctcaaagacctggagaagaactacaacaaagaccaaccacatctcagtgaa
attggctcctgctttctcttgcaggaggagggtttttctatatactcagagtactgtaac
acccacccagtggcctgtgctgagctgcagcgcctcatgaagttgggtcgattcaaacat
ttctttgaggcctgtcggctcctccagcagatgatcgacatctccatcgccggtttcttg
ctcacgcccgtccagaagatctgtaaatacccgctgcagctgggagaactgctcaagtac
accccaaaggaccacagtgacttcagcggagtgagcaaagcatatgacgctatgaagaat
gtggccagtttgataaatgagagtaaaagacgactggagagtgttgacaccatcgctcac
tggcaggtcgccattctgcactgggagggacctgacgtgctggagcgcagttcagagctc
atccactccggggagctggctcgtgccgtccgacaaggcaaaatgcagcagcgcagcttc
ttcctgtttgaccaccagttggtcttctgcaaaaaagacgtcctgcgcagagacctgctc
cactaccgcggacggctggatatggaccagaccgaggtattggacatgcccgacggccgg
gacctagacctgggcttgaccctacggaacgctctgcgcctgcgcgacgcctccactctg
gagtttgtgtgtgtgctgtgctgcaggaaggcccaggacaagcagaggtggctggaggct
tttgccaaggagagacacagagtcaaggaagaccaagagatgggaatggaaatcagtgag
gatcaaagaaaacaggccattgttaatgccagaagagccaaacagggaaagatcaaaccc
atcggttactctggttctgtgccaccccaccacccgcaaaacctccacccgcttcaccag
cgtcacgtcaccattccaaccagcgtgcctcagcagcaggtcttctcattggccgagccc
ccgaaacgaaagccttaccacctgttgtacagcatcacccgcaacgcctttttcaagaag
tga
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