Hippoglossus stenolepis (Pacific halibut): 118098843
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Entry
118098843 CDS
T08308
Symbol
trpa1b
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1b isoform X1
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hsp04040
]
118098843 (trpa1b)
Ion channels [BR:
hsp04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
118098843 (trpa1b)
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GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ion_trans
Ank_KRIT1
ANK_LRRK2
Motif
Other DBs
NCBI-GeneID:
118098843
NCBI-ProteinID:
XP_034998924
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All DBs
Position
19:11346155..11365577
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AA seq
1109 aa
AA seq
DB search
MMNFNRELSSYTCVVAEDDPALASLNLFELAEKGDLALLQNLVRKSPKVLSEKDECGASA
LHHAAAGGHVTLIRFITTVIDSQELNSCDEQGNVPLHWAVERNKEVSCRALMDLRANPNI
LNTALLSPLHLAVNRGHNNLVELLLSYTATNCSLEGDLGNTPVILACSVNNCEAIRILLK
HGARLCQQNKLGHFPIHAAAFAGAKKAMEVILKAGEEFGHSTVNHINYLDKSKSSPLHLA
VHGGNIEAISLCIATGAKVDQQQNDRSTPLHLACTQGATEVVKLMLSSFDQVEDIINLTD
GACQTPLHRATIFDHTELAEYLISLGADLNRIDCKGNSPLLLATSCGAWKTVSLLLSKGA
YVNATDRCGRNFLHLAILQPKGLKNLPQELLQNNSVKALLSCEDNDGCTPLHYACKLGIH
DSVKNMLGLSGKVGLACKSKDKKSALHFAAQYGRINTCQQLLETITDSRLLNEGDGRGMT
PLHLASRGGHTKVVHLLLRKGALVHSDYKGWSCLHHAASEGYTHTMDILLSNNPKLLDKT
DHDGSTALHIAAKEGHVAAVSMMLARGAELILNKNDTSFLHEALQNGKKDVVYALIDSDR
FVEALTTFTPGSSQRCPILDMIEFLPETYKYLLDRCVKESDDDNNSPDYHIEYNFQWLQA
PLVTKKADISKKYQPLASLNAMVQYNRLELLEHPVSKKYLTTKWLAYGSKAHLLNMFVYM
LGLMPLTHLIVTLRPSMNTTGGVHDIIMVPVSFKEQSVDRSISMGMVLAMNIYSIVKEVV
QISQERWNYLKDSSNSTDWVSAIFSLLFIIPVMLNVEGSLHWQAGALAVLQSWIGFLLYL
QRFEGVGIYVVMFGEILKTLLGIMMLFLYLLLAFGLTFHALMLNQEEFDTVPLSLMQTFV
MMVGELNYQSNFLQVYMKDKLPFGPLTFTILVQFVLLMPILLVNLMIGLAVGDIAEVQRN
AVLKRIAMQIQLHTALEDKLPYWFLKRVDKPSITIYPNRKCSRNFLQQLFFRTEEPAEVW
SRVQAKSQSCTVVEKELRKQKSRMKEMSSLLEKQHSLLKLVIQKMEIVSEAEDSDGPPDV
KGSMWPTLSRAQSRGHAVSRWVPLMKAID
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacttcaacagggagctgagctcgtatacgtgtgtggtagcagaagacgatccc
gccctggcaagcctaaatttgtttgagttggccgagaagggcgacctcgctctccttcag
aacctggtgaggaagagcccaaaggtcctgagtgagaaagatgaatgtggagcgagtgcc
cttcatcacgctgccgcagggggccacgtcaccctcatccgattcatcaccactgtcata
gactcacaggagctgaacagttgtgatgagcagggcaacgtgcccctacactgggcagtg
gagaggaacaaagaggtgagctgcagggctcttatggacctgagggccaaccccaacatc
ctcaacacggccctgctgtcccctctgcacctggctgtcaaccgcggacacaacaacctg
gtggagctgctgctgtcttacactgccacaaactgtagtcttgagggagaccttgggaac
accccggtgatactggcctgctctgtcaataactgtgaggctatacgcatactgttaaag
catggagcgcggctctgccaacagaacaagctcggccattttcccatccacgcagctgcc
ttcgcaggtgcaaagaaagccatggaagtgatcctgaaggccggagaggagtttggccac
tcaactgtaaatcacatcaactatttagacaagtcaaagagtagtcccctccacctggct
gttcatggtgggaatattgaagccatcagcctctgcattgccactggggccaaagttgac
cagcaacagaatgacaggtccacgccgctgcacttggcctgtacccagggtgcgactgag
gtagtcaaactgatgctctcctccttcgaccaagtggaagacatcatcaatctaactgac
ggggcatgtcagacccctctgcacagggcaacaatatttgatcacacagagctggccgag
tatctcatttctttgggtgcagacctaaaccgcattgattgtaaaggaaattcccctttg
ctgctggccacgagctgtggagcatggaaaactgtgtctttgctgctgtcgaaaggggcg
tatgtaaatgcgacagacagatgcggtcgtaacttcctccacctggccattctgcagcct
aagggtctgaagaatcttccgcaagaactgctgcagaacaacagtgtgaaggcgctgctg
agctgcgaggacaacgacggctgcacccctctccactacgcttgcaaactgggtatccat
gactcagtaaagaacatgctgggcctctcggggaaggtcggccttgcatgcaagtccaag
gacaagaagtctgcattgcactttgccgcccagtacggccgcatcaatacgtgtcaacaa
ttactggagaccatcacagactctcgtttgctgaacgaaggtgacggtcgaggcatgact
ccgcttcatttggcttcgagagggggacacaccaaggtggtgcatctgctgctgcgtaaa
ggagctctcgttcacagcgattataagggctggagctgcctgcaccatgcagcttctgaa
ggatacacacacacgatggacatcctcctctcaaacaatcccaagttactggataaaacc
gaccatgacgggagcactgcactgcacatcgcagcaaaagagggacatgtggctgcagtc
agcatgatgctggctcggggagcggagctcatcctaaacaagaacgacacttcgttcctg
catgaagcgctgcagaacggcaagaaagatgtggtctatgcgctaatcgacagtgacaga
tttgttgaggcattaacaacgttcacacctggctcaagtcagagatgtcccatactagac
atgatcgagtttctgcctgagacctacaagtacctgttggaccgctgtgttaaggaatct
gatgatgacaacaacagtcctgactaccacattgaatataacttccaatggcttcaagct
cccctcgtaacaaaaaaagcggacatttccaagaagtaccaaccactggcttcactcaat
gcgatggtgcagtacaaccggctcgagcttctcgaacaccctgtcagcaaaaagtacctg
acaacaaagtggcttgcatatgggagcaaggctcatttgctcaacatgtttgtgtacatg
ttaggcctgatgcccctcactcacctgatagtgactctgaggcccagcatgaacaccact
gggggggtgcacgatatcatcatggtgcccgtttctttcaaagagcaaagtgtggaccgg
tccatctctatggggatggtcttggccatgaacatctattccattgtgaaggaggtggtg
cagatatcacaagagcgctggaattacttgaaagattcgtccaacagcaccgactgggtt
tctgccatcttctctctgctgttcatcatccccgtcatgctcaacgtggaaggttcttta
cactggcaggcaggggcattagcagtcttacaatcgtggattggatttctcctttatctc
cagaggtttgagggcgttggaatctatgttgtgatgtttggagagatcctgaagaccctg
ctcggcatcatgatgctgttcttatacctgctgttagcttttggattaacgttccatgct
ttgatgctcaaccaggaagagtttgacaccgtgccactctcactgatgcagacctttgtg
atgatggtcggggagctgaactaccaaagcaactttctgcaagtttacatgaaagacaag
cttcccttcggtccgctgactttcacaattttggtgcaatttgtgctgctcatgcccata
ctgctggtgaacctgatgattggtttagcagttggtgacattgctgaagtacaaagaaat
gctgtcttgaaaagaatagccatgcagattcaactccacactgctctggaagataagctc
ccttactggttcctgaagcgagtcgacaaaccctccataaccatctaccccaaccgcaag
tgctcccggaactttttacagcaattattctttaggactgaggagccagctgaagtttgg
agtcgtgtgcaggccaagtctcagagctgcaccgtggtagagaaagagctgaggaagcag
aagagcaggatgaaagagatgtcgagtctgctggagaagcagcacagcctcctgaagctc
gtcatccagaagatggagatcgtctcggaggccgaagattccgacggccccccggacgtc
aagggcagcatgtggccgactctgagtcgggctcagtcgagaggacacgccgtgtctcgc
tgggtcccgctgatgaaggccatcgattga
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