Hippoglossus stenolepis (Pacific halibut): 118098872
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Entry
118098872 CDS
T08308
Symbol
smarcd3b
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3b isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
118098872 (smarcd3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsp03021
]
118098872 (smarcd3b)
03036 Chromosome and associated proteins [BR:
hsp03036
]
118098872 (smarcd3b)
Transcription machinery [BR:
hsp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
118098872 (smarcd3b)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
118098872 (smarcd3b)
PBAF complex
118098872 (smarcd3b)
GBAF(ncBAF) complex
118098872 (smarcd3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
NPC1_MLD
Motif
Other DBs
NCBI-GeneID:
118098872
NCBI-ProteinID:
XP_034998988
LinkDB
All DBs
Position
19:15475871..15511790
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AA seq
517 aa
AA seq
DB search
MATEETAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPPGPPYGGSPAVRPGL
PTPVMEPSRKRPAPSQQVQQQQQQQQQSVQSRARKKPVGFPGANEMPARQMDMREPQSDP
TLGSNAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMK
QQKRKLRLYISNTFNPARPDADDSDGSIASWELRVEGKLLDDPGKQKKKFSSFFKSLVIE
LDKDLYGPDNHLVEVCLLQWHRTPTTQETDGFQVKRPGDVSVRCTLLLMLDYQPPQFKLD
PRLARLLGIHTQTRSCIIQALWQYVKTNKLQDSHDKEYINCDKYFQQIFDCPRLKFSEIP
QRLTNLLLPPDPIVINHVISVDPNDQKKTACYDIDVEVEDPLKGQMSSFLLSTANQQEIA
SLDNKIHETIESINQLKIQRDFMLSFSRDPKGYIQDWLKSQSRDLKLMTDVVGNPEEERR
SAFYHEPWSQEAVSRYFYCKIQQRRQELEQALAVRNT
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atggctacggaggagacggcggggggagccaggaaagccaccaagagcaaactgtttgag
ttcctggtccatggagtgcgtcctggcatgccgtctggagcgaggatgccccaccagggc
gcccccatgggcccccccggcccaccgtacggagggagccctgctgtgcggcccggcctg
cccaccccggtgatggagcccagtcgcaagaggcccgccccctcccagcaggtccagcag
cagcaacagcagcagcagcagtccgtccagagccgggccagaaagaagccggtcggattc
cccggagccaatgagatgccggcgaggcagatggacatgagagagccccaatcagatccc
acgctcggatccaatgctaagagaaggaaaatggcagacaagattcttccgcaaaggatc
cgtgagctggtgccggagtctcaggcctacatggacctgctggccttcgagcgcaagctg
gaccagaccatcatgcgcaaacgtgtggacatccaggaggcgctgaagagaccaatgaag
cagcaaaagcgtaaactgaggctttacatttccaacaccttcaaccccgccagacccgac
gccgatgactcagatggcagcattgcatcttgggagctgcgagttgaggggaagttgctc
gatgatccggggaagcagaagaagaagttctcttccttttttaagagcctggtgatcgag
ctggacaaagacctgtacggtcctgacaaccacttggtcgaggtgtgtctcctacagtgg
caccgcacgcccaccacccaggagacggacggcttccaggtgaagaggcccggagacgtg
agcgtgcgctgcactctgctgctgatgcttgactaccagcctccgcagttcaagctggac
ccgcgcctggctcgcctgctcggcattcacactcagacccgctcctgcatcatccaggct
ctgtggcagtacgtcaagaccaacaagctgcaggactcccacgacaaggagtacatcaac
tgtgacaagtacttccaacagatttttgactgcccgcggctgaagttctccgagatcccc
cagcgtctcaccaacctccttctgcccccggaccccatcgtcatcaaccacgttatcagc
gtggaccccaatgaccagaagaagacggcgtgctacgacatcgacgtggaggtggaggac
cccctgaagggccagatgagcagcttcctcctctccaccgccaaccagcaggaaatcgcc
tcactcgacaacaagatccacgagaccatcgagtccatcaaccagctgaagatccagagg
gacttcatgctcagcttctccagagatcccaagggctacatccaggactggctcaaatct
cagagcagggacttaaagctaatgacagacgtggtggggaaccctgaggaggagaggagg
tctgcgttctaccacgagccttggtctcaggaggccgtgagccgctatttctactgcaag
atccagcagaggaggcaggagctggaacaggccttagctgtccgcaacacctaa
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